Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JVB21_RS08800 Genome accession   NZ_CP070381
Coordinates   1766900..1767883 (+) Length   327 a.a.
NCBI ID   WP_205271936.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761900..1772883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS10240 - 1761924..1762448 (+) 525 Protein_1692 PolC-type DNA polymerase III N-terminal domain-containing protein -
  JVB21_RS08795 (JVB21_08795) - 1763034..1766807 (+) 3774 Protein_1693 PolC-type DNA polymerase III -
  JVB21_RS08800 (JVB21_08800) comGA 1766900..1767883 (+) 984 WP_205271936.1 competence type IV pilus ATPase ComGA Machinery gene
  JVB21_RS08805 (JVB21_08805) comGB 1767807..1768823 (+) 1017 WP_205272749.1 competence type IV pilus assembly protein ComGB Machinery gene
  JVB21_RS08810 (JVB21_08810) comGC 1768849..1769193 (+) 345 WP_240188681.1 competence type IV pilus major pilin ComGC Machinery gene
  JVB21_RS08815 (JVB21_08815) comGD 1769141..1769584 (+) 444 WP_240188597.1 competence type IV pilus minor pilin ComGD Machinery gene
  JVB21_RS08820 (JVB21_08820) comGF 1769556..1769996 (+) 441 WP_240188599.1 competence type IV pilus minor pilin ComGF Machinery gene
  JVB21_RS08825 (JVB21_08825) comGG 1770008..1770319 (+) 312 WP_205271938.1 competence type IV pilus minor pilin ComGG -
  JVB21_RS08830 (JVB21_08830) - 1770398..1770850 (+) 453 WP_200407576.1 zinc-dependent MarR family transcriptional regulator -
  JVB21_RS08835 (JVB21_08835) - 1770866..1771708 (+) 843 WP_205271939.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JVB21_RS08840 (JVB21_08840) - 1771917..1772654 (+) 738 WP_200407574.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37298.47 Da        Isoelectric Point: 6.4201

>NTDB_id=539561 JVB21_RS08800 WP_205271936.1 1766900..1767883(+) (comGA) [Lactococcus taiwanensis strain K_LL001]
MIQEKAKSIIKQAVERGVTDLYLQGSLTHYDLYFRNLNSKVFTEELALETGSALIAHFKFCAGMNVGEKRRTQLGACWYQ
FGTESRRLRLSSVGDFEGNESLVIRFLHEPKEQLEFWFEAEKLFKQMNFRRGLYLFAGPVGSGKTSLMTNWANRAFDSGQ
VMTVEDPVEIVVSKFVQLQVNDLIGNDYEALIKLSLRHRPDLLIVGEIRDEKTARAVLRASLTGYTVFSTIHAPSISAVW
TRLLEFGISEWELKSCLQAVVYQRLINGKGMVEIAKEGFEHWSHEKWNWQIEELVTQGALDRDEGEREKIASSQTGETHP
THGKSIE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=539561 JVB21_RS08800 WP_205271936.1 1766900..1767883(+) (comGA) [Lactococcus taiwanensis strain K_LL001]
ATGATACAAGAAAAAGCAAAAAGCATTATCAAACAAGCTGTTGAAAGGGGTGTGACAGACCTCTATTTACAAGGAAGTTT
GACGCATTATGACTTATACTTTAGAAATTTAAATTCTAAAGTATTTACAGAGGAGTTAGCTCTAGAAACAGGCTCGGCAC
TGATTGCTCATTTTAAGTTTTGTGCTGGGATGAATGTGGGAGAAAAACGGCGAACACAGTTAGGTGCTTGTTGGTACCAA
TTTGGAACGGAATCAAGACGGCTACGCCTCTCTTCAGTAGGTGACTTTGAAGGAAATGAATCGCTAGTGATTAGATTTTT
ACATGAGCCTAAAGAGCAACTTGAATTCTGGTTTGAAGCTGAAAAACTTTTCAAACAGATGAATTTTAGGCGGGGGTTAT
ATCTTTTTGCTGGACCTGTAGGGTCTGGTAAAACATCCCTGATGACTAATTGGGCTAATCGTGCTTTTGATAGTGGACAG
GTAATGACTGTGGAAGATCCTGTAGAAATTGTTGTATCAAAATTTGTGCAATTGCAAGTCAACGATTTAATAGGCAATGA
TTATGAAGCATTGATCAAGCTTTCCCTGCGTCACCGTCCTGATCTTTTGATTGTAGGAGAAATCCGTGATGAAAAAACAG
CACGTGCAGTTCTTCGAGCAAGTTTAACAGGGTATACAGTTTTTTCGACAATTCATGCCCCCTCAATATCAGCTGTTTGG
ACACGCCTCTTAGAATTTGGTATTTCAGAATGGGAATTAAAAAGTTGTCTGCAAGCAGTTGTTTATCAACGTTTAATAAA
TGGAAAAGGGATGGTGGAAATTGCAAAAGAAGGCTTTGAACACTGGTCACATGAGAAATGGAATTGGCAGATTGAAGAAT
TGGTTACACAAGGAGCTCTTGACAGAGATGAAGGTGAGCGGGAAAAAATTGCCTCTTCCCAAACAGGTGAAACTCATCCA
ACTCATGGGAAATCTATTGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Lactococcus lactis subsp. cremoris KW2

59.756

100

0.599
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae D39

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae R6

53.822

96.024

0.517
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

53.822

96.024

0.517
  comYA Streptococcus gordonii str. Challis substr. CH1

50.47

97.554

0.492
  comYA Streptococcus mutans UA159

50.804

95.107

0.483
  comYA Streptococcus mutans UA140

50.804

95.107

0.483
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

50.645

94.801

0.48