Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   JOA01_RS08860 Genome accession   NZ_CP069079
Coordinates   1753240..1754190 (-) Length   316 a.a.
NCBI ID   WP_217374333.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748240..1759190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS08820 (JOA01_08825) - 1748243..1749430 (-) 1188 WP_217374326.1 acetate kinase -
  JOA01_RS08825 (JOA01_08830) comYH 1749480..1750433 (-) 954 WP_217374327.1 class I SAM-dependent methyltransferase Machinery gene
  JOA01_RS08830 (JOA01_08835) comGG 1750453..1750953 (-) 501 WP_217374328.1 competence type IV pilus minor pilin ComGG -
  JOA01_RS08835 (JOA01_08840) comYF 1750931..1751365 (-) 435 WP_217374329.1 competence type IV pilus minor pilin ComGF Machinery gene
  JOA01_RS08840 (JOA01_08845) comGE 1751352..1751645 (-) 294 WP_217374330.1 competence type IV pilus minor pilin ComGE -
  JOA01_RS08845 (JOA01_08850) comGD 1751617..1752021 (-) 405 WP_160864045.1 competence type IV pilus minor pilin ComGD -
  JOA01_RS08850 (JOA01_08855) comYC 1752011..1752289 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  JOA01_RS08855 (JOA01_08860) comYB 1752291..1753328 (-) 1038 WP_217374332.1 competence type IV pilus assembly protein ComGB Machinery gene
  JOA01_RS08860 (JOA01_08865) comYA 1753240..1754190 (-) 951 WP_217374333.1 competence type IV pilus ATPase ComGA Machinery gene
  JOA01_RS08865 (JOA01_08870) - 1754278..1755228 (+) 951 WP_217375199.1 S66 peptidase family protein -
  JOA01_RS08870 (JOA01_08875) - 1755289..1755630 (-) 342 WP_217374334.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35499.47 Da        Isoelectric Point: 5.4818

>NTDB_id=532193 JOA01_RS08860 WP_217374333.1 1753240..1754190(-) (comYA) [Streptococcus parasuis strain BS26]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRAIDEREYIQELTEDEVMAIISHFKFLAGLNVGEKRRSQQGSCEYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALDRIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISLRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=532193 JOA01_RS08860 WP_217374333.1 1753240..1754190(-) (comYA) [Streptococcus parasuis strain BS26]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGCAATAGATGAACGGGAATATATTCAAGAATTAACCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGAATACGAT
TATGGTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGATAGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCTGGCAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTAGAGATGCAGAAACTG
CTCGAGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGACTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comYA Streptococcus gordonii str. Challis substr. CH1

67.419

98.101

0.661
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.516

98.101

0.633
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.516

98.101

0.633
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.516

98.101

0.633
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.516

98.101

0.633
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.194

98.101

0.63
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.194

98.101

0.63
  comGA Lactococcus lactis subsp. cremoris KW2

55.521

100

0.557
  comGA Latilactobacillus sakei subsp. sakei 23K

42.238

87.658

0.37