Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   JOA01_RS08855 Genome accession   NZ_CP069079
Coordinates   1752291..1753328 (-) Length   345 a.a.
NCBI ID   WP_217374332.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1747291..1758328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS08815 (JOA01_08820) - 1747437..1747988 (-) 552 WP_217374325.1 folate family ECF transporter S component -
  JOA01_RS08820 (JOA01_08825) - 1748243..1749430 (-) 1188 WP_217374326.1 acetate kinase -
  JOA01_RS08825 (JOA01_08830) comYH 1749480..1750433 (-) 954 WP_217374327.1 class I SAM-dependent methyltransferase Machinery gene
  JOA01_RS08830 (JOA01_08835) comGG 1750453..1750953 (-) 501 WP_217374328.1 competence type IV pilus minor pilin ComGG -
  JOA01_RS08835 (JOA01_08840) comYF 1750931..1751365 (-) 435 WP_217374329.1 competence type IV pilus minor pilin ComGF Machinery gene
  JOA01_RS08840 (JOA01_08845) comGE 1751352..1751645 (-) 294 WP_217374330.1 competence type IV pilus minor pilin ComGE -
  JOA01_RS08845 (JOA01_08850) comGD 1751617..1752021 (-) 405 WP_160864045.1 competence type IV pilus minor pilin ComGD -
  JOA01_RS08850 (JOA01_08855) comYC 1752011..1752289 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  JOA01_RS08855 (JOA01_08860) comYB 1752291..1753328 (-) 1038 WP_217374332.1 competence type IV pilus assembly protein ComGB Machinery gene
  JOA01_RS08860 (JOA01_08865) comYA 1753240..1754190 (-) 951 WP_217374333.1 competence type IV pilus ATPase ComGA Machinery gene
  JOA01_RS08865 (JOA01_08870) - 1754278..1755228 (+) 951 WP_217375199.1 S66 peptidase family protein -
  JOA01_RS08870 (JOA01_08875) - 1755289..1755630 (-) 342 WP_217374334.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39335.30 Da        Isoelectric Point: 9.2929

>NTDB_id=532192 JOA01_RS08855 WP_217374332.1 1752291..1753328(-) (comYB) [Streptococcus parasuis strain BS26]
MSKLNAFLQRDISVFGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYHRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIMGLMQE
QKSQLFREIGEDLERSLSDGHSFHSHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=532192 JOA01_RS08855 WP_217374332.1 1752291..1753328(-) (comYB) [Streptococcus parasuis strain BS26]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCGGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAG
TCATATTCAATCTTATCTTGAAAATGTTAGTAAGGTCCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCACAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTATGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAGGATTTAGAGCGTTCACTTTCTGATGGGCATAGTTTCCATTCTCATAT
ACAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGC
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

60.294

98.551

0.594
  comYB Streptococcus mutans UA140

59.531

98.841

0.588
  comYB Streptococcus mutans UA159

59.531

98.841

0.588
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

51.039

97.681

0.499