Detailed information NTG0532190

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: JOA01_RS08835
• Genome accession: NZ_CP069079
• Coordinates: 1750931..1751365 (-)
• Length: 144 a.a.
• NCBI ID: WP_217374329.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain BS26
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1745931..1756365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JOA01_RS08810 (JOA01_08815)	-	1746126..1747382 (-)	1257	WP_217375198.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
JOA01_RS08815 (JOA01_08820)	-	1747437..1747988 (-)	552	WP_217374325.1	folate family ECF transporter S component	-
JOA01_RS08820 (JOA01_08825)	-	1748243..1749430 (-)	1188	WP_217374326.1	acetate kinase	-
JOA01_RS08825 (JOA01_08830)	comYH	1749480..1750433 (-)	954	WP_217374327.1	class I SAM-dependent methyltransferase	Machinery gene
JOA01_RS08830 (JOA01_08835)	comGG	1750453..1750953 (-)	501	WP_217374328.1	competence type IV pilus minor pilin ComGG	-
JOA01_RS08835 (JOA01_08840)	comYF	1750931..1751365 (-)	435	WP_217374329.1	competence type IV pilus minor pilin ComGF	Machinery gene
JOA01_RS08840 (JOA01_08845)	comGE	1751352..1751645 (-)	294	WP_217374330.1	competence type IV pilus minor pilin ComGE	-
JOA01_RS08845 (JOA01_08850)	comGD	1751617..1752021 (-)	405	WP_160864045.1	competence type IV pilus minor pilin ComGD	-
JOA01_RS08850 (JOA01_08855)	comYC	1752011..1752289 (-)	279	WP_217374331.1	competence type IV pilus major pilin ComGC	Machinery gene
JOA01_RS08855 (JOA01_08860)	comYB	1752291..1753328 (-)	1038	WP_217374332.1	competence type IV pilus assembly protein ComGB	Machinery gene
JOA01_RS08860 (JOA01_08865)	comYA	1753240..1754190 (-)	951	WP_217374333.1	competence type IV pilus ATPase ComGA	Machinery gene
JOA01_RS08865 (JOA01_08870)	-	1754278..1755228 (+)	951	WP_217375199.1	S66 peptidase family protein	-
JOA01_RS08870 (JOA01_08875)	-	1755289..1755630 (-)	342	WP_217374334.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16381.75 Da
• Isoelectric Point: 6.4707

>NTDB_id=532190 JOA01_RS08835 WP_217374329.1 1750931..1751365(-) (comYF) [Streptococcus parasuis strain BS26]
MRKTKLAAFTLLECLITLLIISGSLLVIEGLSKLIAHEVGYQERHVEKQWLLFCDQLRAEWEGASLDRVDSGKLYLTKGE
KSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGEVIQLDVTFESGEERSFRYVFEKTN

Nucleotide

• Length: 435 bp

>NTDB_id=532190 JOA01_RS08835 WP_217374329.1 1750931..1751365(-) (comYF) [Streptococcus parasuis strain BS26]
TTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTACCTTACTCATTATTTCTGGCAGCTTGCTAGT
AATTGAAGGATTATCAAAATTGATAGCGCATGAGGTTGGCTATCAAGAACGTCATGTGGAAAAACAGTGGTTACTATTTT
GTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGAAAGTTGTACCTAACCAAAGGGGAA
AAATCATTGGCATTTGGTAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAATGGTCAGGGCTATCAGCCCATGTT
GTACAAAGTTTATTCAGCTACTTATGCCCAACAAGGCGAGGTTATACAGCTGGATGTAACATTTGAAAGTGGGGAGGAAA
GGAGTTTTAGGTATGTTTTTGAAAAAACGAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	53.472	100	0.535
comYF	Streptococcus mutans UA140	53.472	100	0.535
comGF	Lactococcus lactis subsp. cremoris KW2	47.518	97.917	0.465
comGF/cglF	Streptococcus mitis NCTC 12261	45.714	97.222	0.444
comGF/cglF	Streptococcus pneumoniae Rx1	44.203	95.833	0.424
comGF/cglF	Streptococcus pneumoniae D39	44.203	95.833	0.424
comGF/cglF	Streptococcus pneumoniae R6	44.203	95.833	0.424
comGF/cglF	Streptococcus pneumoniae TIGR4	44.203	95.833	0.424
comGF/cglF	Streptococcus mitis SK321	42.857	97.222	0.417