Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JOA01_RS08825 Genome accession   NZ_CP069079
Coordinates   1749480..1750433 (-) Length   317 a.a.
NCBI ID   WP_217374327.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1744480..1755433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS08800 (JOA01_08805) - 1744523..1744807 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  JOA01_RS08805 (JOA01_08810) pepA 1745020..1746081 (+) 1062 WP_217374324.1 glutamyl aminopeptidase -
  JOA01_RS08810 (JOA01_08815) - 1746126..1747382 (-) 1257 WP_217375198.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  JOA01_RS08815 (JOA01_08820) - 1747437..1747988 (-) 552 WP_217374325.1 folate family ECF transporter S component -
  JOA01_RS08820 (JOA01_08825) - 1748243..1749430 (-) 1188 WP_217374326.1 acetate kinase -
  JOA01_RS08825 (JOA01_08830) comYH 1749480..1750433 (-) 954 WP_217374327.1 class I SAM-dependent methyltransferase Machinery gene
  JOA01_RS08830 (JOA01_08835) comGG 1750453..1750953 (-) 501 WP_217374328.1 competence type IV pilus minor pilin ComGG -
  JOA01_RS08835 (JOA01_08840) comYF 1750931..1751365 (-) 435 WP_217374329.1 competence type IV pilus minor pilin ComGF Machinery gene
  JOA01_RS08840 (JOA01_08845) comGE 1751352..1751645 (-) 294 WP_217374330.1 competence type IV pilus minor pilin ComGE -
  JOA01_RS08845 (JOA01_08850) comGD 1751617..1752021 (-) 405 WP_160864045.1 competence type IV pilus minor pilin ComGD -
  JOA01_RS08850 (JOA01_08855) comYC 1752011..1752289 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  JOA01_RS08855 (JOA01_08860) comYB 1752291..1753328 (-) 1038 WP_217374332.1 competence type IV pilus assembly protein ComGB Machinery gene
  JOA01_RS08860 (JOA01_08865) comYA 1753240..1754190 (-) 951 WP_217374333.1 competence type IV pilus ATPase ComGA Machinery gene
  JOA01_RS08865 (JOA01_08870) - 1754278..1755228 (+) 951 WP_217375199.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35624.87 Da        Isoelectric Point: 4.6418

>NTDB_id=532189 JOA01_RS08825 WP_217374327.1 1749480..1750433(-) (comYH) [Streptococcus parasuis strain BS26]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETELVLNNNQILRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEKANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=532189 JOA01_RS08825 WP_217374327.1 1749480..1750433(-) (comYH) [Streptococcus parasuis strain BS26]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAACAATC
AAATCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTACTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTTGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGATTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACTAGTCCGCAA
AGCGATTTATTAAAAGGCTGGTTACAAGAAAAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

59.494

99.685

0.593
  comYH Streptococcus mutans UA159

59.177

99.685

0.59