Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | JIO00_RS25020 | Genome accession | NZ_CP067098 |
| Coordinates | 5538415..5538822 (-) | Length | 135 a.a. |
| NCBI ID | WP_010467585.1 | Uniprot ID | A0A024EFQ4 |
| Organism | Pseudomonas sp. SW-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5533415..5543822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JIO00_RS25005 (JIO00_25005) | - | 5534213..5537167 (+) | 2955 | WP_200667026.1 | DUF748 domain-containing protein | - |
| JIO00_RS25010 (JIO00_25010) | - | 5537167..5537463 (+) | 297 | WP_154501766.1 | DUF2845 domain-containing protein | - |
| JIO00_RS25015 (JIO00_25015) | - | 5537749..5538102 (-) | 354 | WP_010467586.1 | BON domain-containing protein | - |
| JIO00_RS25020 (JIO00_25020) | pilA | 5538415..5538822 (-) | 408 | WP_010467585.1 | pilin | Machinery gene |
| JIO00_RS25025 (JIO00_25025) | pilB | 5539048..5540748 (+) | 1701 | WP_200667028.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JIO00_RS25030 (JIO00_25030) | pilC | 5540751..5541968 (+) | 1218 | WP_010467583.1 | type II secretion system F family protein | Machinery gene |
| JIO00_RS25035 (JIO00_25035) | pilD | 5541970..5542842 (+) | 873 | WP_145308756.1 | A24 family peptidase | Machinery gene |
| JIO00_RS25040 (JIO00_25040) | coaE | 5542839..5543462 (+) | 624 | WP_042932554.1 | dephospho-CoA kinase | - |
| JIO00_RS25045 (JIO00_25045) | yacG | 5543459..5543659 (+) | 201 | WP_010467579.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13770.94 Da Isoelectric Point: 8.1079
>NTDB_id=525029 JIO00_RS25020 WP_010467585.1 5538415..5538822(-) (pilA) [Pseudomonas sp. SW-3]
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVAQEYAPKGCTGV
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVAQEYAPKGCTGV
Nucleotide
Download Length: 408 bp
>NTDB_id=525029 JIO00_RS25020 WP_010467585.1 5538415..5538822(-) (pilA) [Pseudomonas sp. SW-3]
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTTAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCCACCACAGTGGCTCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTTAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCCACCACAGTGGCTCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
50 |
100 |
0.511 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.445 |
100 |
0.481 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.357 |
100 |
0.459 |
| pilA | Vibrio cholerae strain A1552 |
43.357 |
100 |
0.459 |
| pilA | Vibrio cholerae C6706 |
43.357 |
100 |
0.459 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.704 |
100 |
0.437 |
| pilA | Pseudomonas aeruginosa PAK |
39.597 |
100 |
0.437 |
| comP | Acinetobacter baylyi ADP1 |
35.374 |
100 |
0.385 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.879 |
100 |
0.385 |
| pilA2 | Legionella pneumophila str. Paris |
37.778 |
100 |
0.378 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.037 |
100 |
0.37 |