Detailed information NTG0525032

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JIO00_RS25035
• Genome accession: NZ_CP067098
• Coordinates: 5541970..5542842 (+)
• Length: 290 a.a.
• NCBI ID: WP_145308756.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SW-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5536970..5547842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JIO00_RS25010 (JIO00_25010)	-	5537167..5537463 (+)	297	WP_154501766.1	DUF2845 domain-containing protein	-
JIO00_RS25015 (JIO00_25015)	-	5537749..5538102 (-)	354	WP_010467586.1	BON domain-containing protein	-
JIO00_RS25020 (JIO00_25020)	pilA	5538415..5538822 (-)	408	WP_010467585.1	pilin	Machinery gene
JIO00_RS25025 (JIO00_25025)	pilB	5539048..5540748 (+)	1701	WP_200667028.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JIO00_RS25030 (JIO00_25030)	pilC	5540751..5541968 (+)	1218	WP_010467583.1	type II secretion system F family protein	Machinery gene
JIO00_RS25035 (JIO00_25035)	pilD	5541970..5542842 (+)	873	WP_145308756.1	A24 family peptidase	Machinery gene
JIO00_RS25040 (JIO00_25040)	coaE	5542839..5543462 (+)	624	WP_042932554.1	dephospho-CoA kinase	-
JIO00_RS25045 (JIO00_25045)	yacG	5543459..5543659 (+)	201	WP_010467579.1	DNA gyrase inhibitor YacG	-
JIO00_RS25050 (JIO00_25050)	-	5543663..5543878 (-)	216	WP_010467577.1	hypothetical protein	-
JIO00_RS25055 (JIO00_25055)	-	5543942..5544631 (-)	690	WP_083375730.1	energy-coupling factor ABC transporter permease	-
JIO00_RS25060 (JIO00_25060)	-	5544628..5545095 (-)	468	WP_010467572.1	hypothetical protein	-
JIO00_RS25065 (JIO00_25065)	-	5545225..5545851 (+)	627	WP_007970534.1	DUF1780 domain-containing protein	-
JIO00_RS25070 (JIO00_25070)	-	5545848..5546375 (+)	528	WP_010467568.1	MOSC domain-containing protein	-
JIO00_RS25075 (JIO00_25075)	-	5546427..5546600 (+)	174	WP_008028730.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32189.54 Da
• Isoelectric Point: 8.2577

>NTDB_id=525032 JIO00_RS25035 WP_145308756.1 5541970..5542842(+) (pilD) [Pseudomonas sp. SW-3]
MPLNEVLILYPLVFVVIALAVGLLVGSFLNVVVWRLPKMLQREWRLQAHDVLGFPPEAPGTAYNLMLPHSHCPQCDHRIR
AWENIPLLSYLFLRGRCSNCAAPISKRYPLTELACGLLSGFIAWHFGFGWQACMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHEALWGAVAGYMTLWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNAQTSTPIPFGPFLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=525032 JIO00_RS25035 WP_145308756.1 5541970..5542842(+) (pilD) [Pseudomonas sp. SW-3]
ATGCCCTTGAACGAAGTCCTGATCCTCTATCCGCTGGTGTTCGTGGTCATCGCCTTGGCAGTCGGCCTGCTGGTAGGCAG
TTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCCAACGCGAATGGCGGCTGCAAGCCCATGACGTGTTGGGTT
TTCCGCCCGAGGCACCGGGCACCGCCTACAACTTGATGCTGCCTCATTCCCACTGCCCGCAGTGCGACCATCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATCTGTTTTTACGGGGTCGATGCTCGAACTGCGCCGCGCCAATCAGCAAACG
TTATCCGCTGACTGAACTGGCCTGCGGTCTGCTCTCGGGGTTTATCGCCTGGCATTTCGGCTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTA
CTGCCACTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCACTGCATGAGGCATTGTGGGGCGCTGT
GGCCGGTTATATGACCTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGAATCGGCCATGGCGATT
TCAAGTTACTGGCCCTGCTCGGGGCCTGGGGCGGCTGGCAGATATTGCCGTTGACCATTCTGCTGTCATCGCTCGTGGGG
GCCATCATCGGGGTGATTTTGCTGCGACTGCGCAACGCGCAAACCTCAACTCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	52.837	97.241	0.514
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Acinetobacter nosocomialis M2	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445