Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JCR30_RS06995 | Genome accession | NZ_CP067008 |
| Coordinates | 1366255..1366680 (-) | Length | 141 a.a. |
| NCBI ID | WP_011285575.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain iGAS426 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1361255..1371680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JCR30_RS06945 (JCR30_06945) | - | 1362324..1362758 (-) | 435 | WP_011888687.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| JCR30_RS06950 (JCR30_06950) | - | 1363042..1363212 (-) | 171 | WP_002987493.1 | hypothetical protein | - |
| JCR30_RS06955 (JCR30_06955) | - | 1363209..1363688 (-) | 480 | WP_011888686.1 | DUF1642 domain-containing protein | - |
| JCR30_RS06960 (JCR30_06960) | - | 1363693..1364325 (-) | 633 | WP_011888685.1 | N-6 DNA methylase | - |
| JCR30_RS06965 (JCR30_06965) | - | 1364327..1364611 (-) | 285 | WP_011284869.1 | hypothetical protein | - |
| JCR30_RS06970 (JCR30_06970) | - | 1364608..1364778 (-) | 171 | WP_002995952.1 | hypothetical protein | - |
| JCR30_RS06975 (JCR30_06975) | - | 1364775..1365011 (-) | 237 | WP_002995955.1 | DUF3310 domain-containing protein | - |
| JCR30_RS09770 | - | 1365011..1365256 (-) | 246 | WP_011285573.1 | hypothetical protein | - |
| JCR30_RS06980 (JCR30_06980) | - | 1365253..1365609 (-) | 357 | WP_011284873.1 | hypothetical protein | - |
| JCR30_RS06985 (JCR30_06985) | - | 1365606..1366046 (-) | 441 | WP_011285574.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JCR30_RS06990 (JCR30_06990) | - | 1366046..1366249 (-) | 204 | WP_011106686.1 | hypothetical protein | - |
| JCR30_RS06995 (JCR30_06995) | ssb | 1366255..1366680 (-) | 426 | WP_011285575.1 | single-stranded DNA-binding protein | Machinery gene |
| JCR30_RS09730 | - | 1366918..1367346 (-) | 429 | Protein_1347 | ERF family protein | - |
| JCR30_RS07005 (JCR30_07005) | - | 1367347..1367829 (-) | 483 | WP_011018142.1 | siphovirus Gp157 family protein | - |
| JCR30_RS07010 (JCR30_07010) | - | 1367851..1368105 (-) | 255 | WP_011018143.1 | hypothetical protein | - |
| JCR30_RS07015 (JCR30_07015) | - | 1368086..1368439 (-) | 354 | WP_011285579.1 | hypothetical protein | - |
| JCR30_RS07020 (JCR30_07020) | - | 1368580..1369362 (-) | 783 | WP_011888684.1 | ATP-binding protein | - |
| JCR30_RS07025 (JCR30_07025) | - | 1369349..1370065 (-) | 717 | WP_011888683.1 | DnaD domain protein | - |
| JCR30_RS07030 (JCR30_07030) | - | 1370159..1370296 (-) | 138 | WP_011017881.1 | hypothetical protein | - |
| JCR30_RS07035 (JCR30_07035) | - | 1370327..1370578 (-) | 252 | WP_011888682.1 | hypothetical protein | - |
| JCR30_RS07040 (JCR30_07040) | - | 1370649..1370834 (-) | 186 | WP_011054585.1 | helix-turn-helix transcriptional regulator | - |
| JCR30_RS07045 (JCR30_07045) | - | 1371001..1371240 (+) | 240 | WP_011284879.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15995.63 Da Isoelectric Point: 4.5748
>NTDB_id=524238 JCR30_RS06995 WP_011285575.1 1366255..1366680(-) (ssb) [Streptococcus pyogenes strain iGAS426]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=524238 JCR30_RS06995 WP_011285575.1 1366255..1366680(-) (ssb) [Streptococcus pyogenes strain iGAS426]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.66 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.972 |
100 |
0.44 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.262 |
100 |
0.433 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.262 |
100 |
0.433 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
51.786 |
79.433 |
0.411 |
| ssbA | Streptococcus mutans UA159 |
40.426 |
100 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
29.379 |
100 |
0.369 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
49.524 |
74.468 |
0.369 |