Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | JH266_RS05255 | Genome accession | NZ_CP066948 |
| Coordinates | 1246121..1246549 (+) | Length | 142 a.a. |
| NCBI ID | WP_057671660.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 0793 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1160911..1256225 | 1246121..1246549 | within | 0 |
Gene organization within MGE regions
Location: 1160911..1256225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH266_RS04905 (JH266_04905) | - | 1161240..1162136 (-) | 897 | Protein_950 | ATP-binding protein | - |
| JH266_RS04910 | - | 1162133..1165339 (-) | 3207 | WP_274375510.1 | TerB N-terminal domain-containing protein | - |
| JH266_RS04915 (JH266_04915) | - | 1165515..1168088 (+) | 2574 | WP_081020869.1 | AAA family ATPase | - |
| JH266_RS04920 (JH266_04920) | - | 1168200..1169276 (-) | 1077 | WP_274375511.1 | hypothetical protein | - |
| JH266_RS04925 (JH266_04925) | - | 1169814..1171205 (-) | 1392 | WP_249453410.1 | site-specific integrase | - |
| JH266_RS04930 (JH266_04930) | - | 1171879..1173023 (+) | 1145 | WP_087942071.1 | IS3 family transposase | - |
| JH266_RS04935 (JH266_04935) | - | 1173336..1175024 (+) | 1689 | WP_233362759.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JH266_RS04940 (JH266_04940) | - | 1175036..1175707 (+) | 672 | WP_274375512.1 | DUF1629 domain-containing protein | - |
| JH266_RS04945 (JH266_04945) | - | 1175748..1176386 (+) | 639 | WP_233362757.1 | DUF1629 domain-containing protein | - |
| JH266_RS04950 (JH266_04950) | - | 1176434..1180036 (+) | 3603 | WP_274375513.1 | peptidoglycan-binding protein | - |
| JH266_RS04955 (JH266_04955) | - | 1180272..1181570 (+) | 1299 | WP_043877774.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| JH266_RS04960 (JH266_04960) | - | 1181567..1183783 (+) | 2217 | WP_274375514.1 | peptidase domain-containing ABC transporter | - |
| JH266_RS04965 (JH266_04965) | - | 1183886..1184698 (+) | 813 | WP_274375515.1 | pesticin C-terminus-like muramidase | - |
| JH266_RS04970 (JH266_04970) | - | 1184728..1185222 (+) | 495 | WP_274375516.1 | hypothetical protein | - |
| JH266_RS04975 (JH266_04980) | - | 1185422..1186192 (+) | 771 | WP_274375517.1 | hypothetical protein | - |
| JH266_RS04980 (JH266_04985) | - | 1186259..1186897 (+) | 639 | WP_139328711.1 | hypothetical protein | - |
| JH266_RS04985 (JH266_04990) | - | 1186941..1187465 (+) | 525 | WP_076038855.1 | hypothetical protein | - |
| JH266_RS04990 (JH266_04995) | - | 1187582..1187764 (+) | 183 | WP_274375518.1 | hypothetical protein | - |
| JH266_RS04995 (JH266_05000) | - | 1187871..1189238 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH266_RS05000 (JH266_05005) | - | 1189383..1190750 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH266_RS05005 (JH266_05010) | - | 1191167..1192534 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH266_RS05010 (JH266_05015) | - | 1192951..1194318 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH266_RS05015 (JH266_05020) | - | 1194859..1196136 (-) | 1278 | WP_131084748.1 | ABC transporter permease | - |
| JH266_RS05020 (JH266_05025) | - | 1196199..1196630 (-) | 432 | WP_274375519.1 | toxin-activating lysine-acyltransferase | - |
| JH266_RS05025 (JH266_05030) | - | 1196620..1198434 (-) | 1815 | WP_274375520.1 | protein adenylyltransferase SelO family protein | - |
| JH266_RS22495 | - | 1199029..1199490 (+) | 462 | Protein_975 | MobA/MobL family protein | - |
| JH266_RS22500 | - | 1199383..1199607 (-) | 225 | WP_337998625.1 | hypothetical protein | - |
| JH266_RS05035 (JH266_05040) | - | 1200678..1201778 (-) | 1101 | WP_076038478.1 | XRE family transcriptional regulator | - |
| JH266_RS05040 (JH266_05045) | - | 1201775..1202371 (-) | 597 | WP_076038479.1 | hypothetical protein | - |
| JH266_RS05045 (JH266_05050) | - | 1202701..1204250 (+) | 1550 | Protein_979 | site-specific integrase | - |
| JH266_RS05050 (JH266_05055) | - | 1204331..1204759 (+) | 429 | WP_144410827.1 | hypothetical protein | - |
| JH266_RS05055 (JH266_05060) | - | 1205145..1205933 (-) | 789 | WP_144410826.1 | hypothetical protein | - |
| JH266_RS05060 (JH266_05065) | - | 1206532..1207352 (+) | 821 | Protein_982 | IS3-like element ISXca1 family transposase | - |
| JH266_RS05065 (JH266_05070) | - | 1207421..1208523 (+) | 1103 | WP_100101058.1 | IS3-like element IS1404 family transposase | - |
| JH266_RS05070 (JH266_05075) | - | 1208998..1209582 (+) | 585 | WP_274375522.1 | hypothetical protein | - |
| JH266_RS05075 (JH266_05080) | - | 1209820..1210059 (+) | 240 | WP_274375523.1 | hypothetical protein | - |
| JH266_RS05080 | - | 1210342..1210569 (+) | 228 | Protein_986 | DNA repair protein RadC | - |
| JH266_RS05085 (JH266_05090) | - | 1210686..1211666 (-) | 981 | WP_012438063.1 | IS5-like element IS1646 family transposase | - |
| JH266_RS05090 (JH266_05095) | - | 1211754..1212068 (+) | 315 | Protein_988 | JAB domain-containing protein | - |
| JH266_RS05095 (JH266_05100) | - | 1212141..1213295 (+) | 1155 | WP_274339168.1 | XRE family transcriptional regulator | - |
| JH266_RS05100 (JH266_05105) | - | 1213776..1214354 (+) | 579 | Protein_990 | thermonuclease family protein | - |
| JH266_RS05105 (JH266_05110) | - | 1214488..1215129 (+) | 642 | WP_274375524.1 | DUF1629 domain-containing protein | - |
| JH266_RS05110 (JH266_05115) | - | 1215166..1219206 (+) | 4041 | WP_274375525.1 | hypothetical protein | - |
| JH266_RS05115 (JH266_05120) | - | 1219246..1219896 (+) | 651 | WP_274375526.1 | hypothetical protein | - |
| JH266_RS05120 (JH266_05125) | - | 1220613..1221827 (-) | 1215 | WP_011035386.1 | IS4-like element IS1481A family transposase | - |
| JH266_RS05125 (JH266_05130) | - | 1221895..1222749 (-) | 855 | WP_274375527.1 | caspase family protein | - |
| JH266_RS05130 (JH266_05135) | - | 1222746..1223114 (-) | 369 | WP_274339164.1 | TIR domain-containing protein | - |
| JH266_RS05135 (JH266_05140) | - | 1223281..1224648 (+) | 1368 | WP_011035783.1 | IS5-like element IS1478 family transposase | - |
| JH266_RS05150 (JH266_05150) | - | 1226278..1227879 (+) | 1602 | WP_337998626.1 | MobA/MobL family protein | - |
| JH266_RS05155 (JH266_05155) | - | 1227824..1228318 (-) | 495 | WP_274375528.1 | transcriptional regulator | - |
| JH266_RS05160 (JH266_05160) | - | 1228532..1229512 (-) | 981 | WP_012438063.1 | IS5-like element IS1646 family transposase | - |
| JH266_RS05165 (JH266_05165) | - | 1229516..1229770 (-) | 255 | WP_274375529.1 | DUF6516 family protein | - |
| JH266_RS05170 (JH266_05170) | - | 1229835..1230176 (-) | 342 | WP_070689991.1 | hypothetical protein | - |
| JH266_RS05175 (JH266_05175) | - | 1230548..1231762 (+) | 1215 | WP_011035386.1 | IS4-like element IS1481A family transposase | - |
| JH266_RS05180 (JH266_05180) | - | 1232232..1232603 (+) | 372 | WP_274375530.1 | hypothetical protein | - |
| JH266_RS05185 | - | 1232736..1233077 (+) | 342 | WP_228441887.1 | hypothetical protein | - |
| JH266_RS05190 (JH266_05190) | - | 1233195..1233341 (+) | 147 | WP_116889157.1 | hypothetical protein | - |
| JH266_RS05195 (JH266_05195) | - | 1233526..1233921 (+) | 396 | WP_274375531.1 | hypothetical protein | - |
| JH266_RS05200 (JH266_05200) | - | 1234012..1234404 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH266_RS05205 (JH266_05205) | glgX | 1234929..1237058 (-) | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| JH266_RS05210 (JH266_05210) | rimK | 1237551..1238426 (+) | 876 | WP_011038222.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH266_RS05215 (JH266_05215) | - | 1239076..1239753 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| JH266_RS05220 (JH266_05220) | - | 1239746..1241080 (+) | 1335 | WP_227971331.1 | HAMP domain-containing sensor histidine kinase | - |
| JH266_RS05225 (JH266_05225) | - | 1241223..1241714 (-) | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | - |
| JH266_RS05230 (JH266_05230) | - | 1241711..1242001 (-) | 291 | WP_274375532.1 | DUF1778 domain-containing protein | - |
| JH266_RS05235 (JH266_05235) | - | 1242077..1242478 (-) | 402 | WP_076037054.1 | SymE family type I addiction module toxin | - |
| JH266_RS05240 (JH266_05240) | coaE | 1243010..1243633 (-) | 624 | WP_040940796.1 | dephospho-CoA kinase | - |
| JH266_RS05245 (JH266_05245) | - | 1243647..1244510 (-) | 864 | WP_057671659.1 | A24 family peptidase | - |
| JH266_RS05250 (JH266_05250) | pilC | 1244517..1245779 (-) | 1263 | WP_057671824.1 | type II secretion system F family protein | Machinery gene |
| JH266_RS05255 (JH266_05255) | pilA | 1246121..1246549 (+) | 429 | WP_057671660.1 | pilin | Machinery gene |
| JH266_RS05260 (JH266_05260) | pilB | 1246685..1248415 (+) | 1731 | WP_274375747.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JH266_RS05265 (JH266_05265) | - | 1248598..1248813 (-) | 216 | WP_274375533.1 | hypothetical protein | - |
| JH266_RS05270 (JH266_05270) | - | 1248895..1249335 (-) | 441 | WP_274375534.1 | hypothetical protein | - |
| JH266_RS05275 (JH266_05275) | - | 1249335..1249697 (-) | 363 | WP_217694196.1 | hypothetical protein | - |
| JH266_RS05280 (JH266_05280) | pilR | 1249889..1251283 (-) | 1395 | WP_043921909.1 | sigma-54 dependent transcriptional regulator | Regulator |
| JH266_RS05285 (JH266_05285) | - | 1251492..1253102 (-) | 1611 | WP_011038210.1 | HAMP domain-containing sensor histidine kinase | - |
| JH266_RS05290 (JH266_05290) | sucC | 1253336..1254505 (+) | 1170 | WP_012437609.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH266_RS05295 (JH266_05295) | sucD | 1254530..1255405 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH266_RS05300 (JH266_05300) | - | 1255509..1255919 (+) | 411 | WP_029628876.1 | DNA-binding protein | - |
| JH266_RS05305 (JH266_05305) | - | 1255923..1256225 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14272.35 Da Isoelectric Point: 9.1206
>NTDB_id=523498 JH266_RS05255 WP_057671660.1 1246121..1246549(+) (pilA) [Xanthomonas campestris pv. campestris strain 0793]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALDSGWTAPTATNNVASVA
VATATGNITVTTTAKAGGGTIIFAPSANGAALASGTVPTDRISWDCKGGTLAAKYRPAECRT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALDSGWTAPTATNNVASVA
VATATGNITVTTTAKAGGGTIIFAPSANGAALASGTVPTDRISWDCKGGTLAAKYRPAECRT
Nucleotide
Download Length: 429 bp
>NTDB_id=523498 JH266_RS05255 WP_057671660.1 1246121..1246549(+) (pilA) [Xanthomonas campestris pv. campestris strain 0793]
ATGAAAAAGCAACAAGGCTTTACCCTGATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGCT
GCCGGCTTATCAGGACTACACCGTTCGCGGTCGTGTCTCTGAAGCAATGGTTGCTGCCTCTGCTGCCAAGACGGTTGTGG
CCGAGAATGCTGCGAACGGCTCCGCCCTAGACAGTGGTTGGACCGCTCCTACGGCAACTAACAATGTCGCCAGCGTCGCT
GTTGCTACCGCTACGGGCAATATCACTGTTACTACCACTGCCAAGGCCGGTGGCGGCACGATAATCTTTGCTCCCTCGGC
TAACGGTGCTGCACTGGCTTCCGGTACTGTTCCAACCGATCGTATTTCTTGGGATTGCAAGGGCGGCACCTTGGCTGCCA
AGTACCGTCCAGCTGAATGCCGCACCTAA
ATGAAAAAGCAACAAGGCTTTACCCTGATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGCT
GCCGGCTTATCAGGACTACACCGTTCGCGGTCGTGTCTCTGAAGCAATGGTTGCTGCCTCTGCTGCCAAGACGGTTGTGG
CCGAGAATGCTGCGAACGGCTCCGCCCTAGACAGTGGTTGGACCGCTCCTACGGCAACTAACAATGTCGCCAGCGTCGCT
GTTGCTACCGCTACGGGCAATATCACTGTTACTACCACTGCCAAGGCCGGTGGCGGCACGATAATCTTTGCTCCCTCGGC
TAACGGTGCTGCACTGGCTTCCGGTACTGTTCCAACCGATCGTATTTCTTGGGATTGCAAGGGCGGCACCTTGGCTGCCA
AGTACCGTCCAGCTGAATGCCGCACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
52.201 |
100 |
0.585 |
| pilA2 | Legionella pneumophila str. Paris |
54.795 |
100 |
0.563 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.795 |
100 |
0.563 |
| comP | Acinetobacter baylyi ADP1 |
47.771 |
100 |
0.528 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.247 |
100 |
0.514 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40 |
100 |
0.437 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.541 |
100 |
0.423 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.136 |
100 |
0.415 |
| pilA | Acinetobacter baumannii strain A118 |
40.426 |
99.296 |
0.401 |
| pilA | Vibrio cholerae C6706 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae strain A1552 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
33.766 |
100 |
0.366 |