Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   YB51_RS09420 Genome accession   NC_022516
Coordinates   1908742..1910712 (-) Length   656 a.a.
NCBI ID   WP_013730640.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903742..1915712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS09395 (YB51_9405) - 1904054..1904587 (-) 534 WP_013730635.1 hypothetical protein -
  YB51_RS09400 (YB51_9410) - 1904902..1905630 (-) 729 WP_013730636.1 metallophosphoesterase -
  YB51_RS09405 (YB51_9415) - 1905696..1907045 (-) 1350 WP_002939907.1 glucose-6-phosphate isomerase -
  YB51_RS09410 (YB51_9420) - 1907127..1907669 (-) 543 WP_013730638.1 hypothetical protein -
  YB51_RS09415 (YB51_9425) tadA 1907941..1908462 (-) 522 WP_013730639.1 tRNA adenosine(34) deaminase TadA -
  YB51_RS09420 (YB51_9430) recP/tkt 1908742..1910712 (-) 1971 WP_013730640.1 transketolase Machinery gene
  YB51_RS09425 (YB51_9435) ulaG 1910924..1912015 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  YB51_RS09430 (YB51_9440) - 1912125..1913813 (-) 1689 WP_004194414.1 BglG family transcription antiterminator -
  YB51_RS09435 (YB51_9445) - 1913938..1914555 (-) 618 WP_004194416.1 hypothetical protein -
  YB51_RS09440 (YB51_9450) - 1914640..1915356 (-) 717 WP_004194418.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70760.63 Da        Isoelectric Point: 4.7816

>NTDB_id=52054 YB51_RS09420 WP_013730640.1 1908742..1910712(-) (recP/tkt) [Streptococcus suis YB51]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFEE
VSMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKAAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEVAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=52054 YB51_RS09420 WP_013730640.1 1908742..1910712(-) (recP/tkt) [Streptococcus suis YB51]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCAGCTCAGCCAAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGTTGCTTTACGGACTTCTTCACCTTTCAGGTTTTGAAGAA
GTGAGTATGGATGAGATCAAGAACTTCCGTCAGTGGGGATCAAAAACGCCAGGTCACCCAGAATTTGGTCACACAGCAGG
TGTAGATGCAACAACAGGTCCTCTTGGACAAGGTATCTCAACTGCGACAGGTTTTGCACAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGCGATGGTTTCCCAATCTTTGACCACTATACTTACGTAATCTGTGGTGATGGCGACTTGATGGAGGGT
GTTTCAGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGATTCCTTCACAGAAGATGTACGTGCCCGTTACAATGCCTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAAGCTAAGGCAGCAGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGCACCATTTGAAATTCCAGCTGAAGTCTATGCGGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTGAAATTAGTTGAAGACTACAAAGTAGCACATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGACGTAGTTGAAATTAAGCCAGAAGACTTCCCGGTTTACGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCCCTCAACGCAGCGGCTAAAGTATTGCCAACTTTCTTAGGTG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTACATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAACCGC
AATATTCAGTTCGGTGTGCGTGAATTTGCCATGGGAACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTTGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCTGTGACTT
ATGTCTTCACTCATGACTCTATCGCAGTTGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTCTTCCGCCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGAACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGTAGCAGGGTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTTAAA
GCTGCCAAAGAACTAGAAGCAGCAGGTACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
CGCAGCTTACAAGGAAGAAATCCTTCCAAATGCTATCCGTCGTCGCTTGGCAATTGAAATGGGTGCAACTCAAAGTTGGT
ACAAGTATGTCGGTCTTGACGGTAAAGTCCTTGGTATCGACACATTCGGTGCCTCAGCTCCAGCCCAAACAGTTATTGAC
AACTACGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(536-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.25

100

0.813

Multiple sequence alignment