Detailed information NTG0516960

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: I6H78_RS04480
• Genome accession: NZ_CP066059
• Coordinates: 931590..932024 (-)
• Length: 144 a.a.
• NCBI ID: WP_198460193.1
• Uniprot ID: A0A7T4M293
• Organism: Streptococcus oralis strain FDAARGOS_1021
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 926590..937024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H78_RS04445 (I6H78_04445)	rnpA	927113..927484 (-)	372	WP_000748120.1	ribonuclease P protein component	-
I6H78_RS04450 (I6H78_04450)	-	927634..928824 (-)	1191	WP_198460190.1	acetate kinase	-
I6H78_RS04455 (I6H78_04455)	comYH	928875..929828 (-)	954	WP_198460191.1	class I SAM-dependent methyltransferase	Machinery gene
I6H78_RS04460 (I6H78_04460)	-	929887..930477 (-)	591	WP_198460192.1	class I SAM-dependent methyltransferase	-
I6H78_RS04465 (I6H78_04465)	comGG/cglG	930510..930923 (-)	414	WP_000265643.1	competence type IV pilus minor pilin ComGG	Machinery gene
I6H78_RS04470 (I6H78_04470)	comGF/cglF	930901..931362 (-)	462	WP_000250706.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6H78_RS04475 (I6H78_04475)	comGE/cglE	931325..931627 (-)	303	WP_000413374.1	competence type IV pilus minor pilin ComGE	Machinery gene
I6H78_RS04480 (I6H78_04480)	comGD/cglD	931590..932024 (-)	435	WP_198460193.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6H78_RS04485 (I6H78_04485)	comGC/cglC	931987..932310 (-)	324	WP_000735798.1	competence type IV pilus major pilin ComGC	Machinery gene
I6H78_RS04490 (I6H78_04490)	comGB/cglB	932312..933328 (-)	1017	WP_198460227.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6H78_RS04495 (I6H78_04495)	comGA/cglA/cilD	933276..934217 (-)	942	WP_198460194.1	competence type IV pilus ATPase ComGA	Machinery gene
I6H78_RS04500 (I6H78_04500)	-	934280..934645 (-)	366	WP_000286396.1	DUF1033 family protein	-
I6H78_RS04505 (I6H78_04505)	nagA	934798..935949 (-)	1152	WP_198460195.1	N-acetylglucosamine-6-phosphate deacetylase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 15972.38 Da
• Isoelectric Point: 10.1525

>NTDB_id=516960 I6H78_RS04480 WP_198460193.1 931590..932024(-) (comGD/cglD) [Streptococcus oralis strain FDAARGOS_1021]
MQNKKQVKLLQIKAFTMLESLLVLGLVSIIALGLSGSVQSTFAEVEEQIFFMEFEELYRETQKRSVGSQEKFSLNLDGQT
ISNGNQNLTVPKGIQAPSGQSIIFDRAGGNSSLAKVEFHTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 435 bp

>NTDB_id=516960 I6H78_RS04480 WP_198460193.1 931590..932024(-) (comGD/cglD) [Streptococcus oralis strain FDAARGOS_1021]
ATGCAAAACAAAAAACAAGTCAAACTGTTGCAGATTAAGGCCTTTACTATGCTGGAGAGTCTCTTGGTTTTGGGACTTGT
GAGTATCATTGCCTTGGGCTTGTCCGGTTCTGTCCAGTCCACTTTTGCAGAGGTAGAGGAGCAGATTTTCTTTATGGAGT
TTGAAGAACTCTATAGGGAAACCCAAAAACGCAGTGTAGGCAGTCAGGAAAAATTTAGCTTGAACTTAGATGGGCAGACG
ATCAGTAACGGCAATCAAAACTTAACTGTTCCTAAAGGAATTCAGGCCCCATCAGGACAAAGCATTATATTTGACCGAGC
TGGGGGCAATTCGTCCCTGGCTAAGGTTGAATTTCATACAAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATG
GAAAAATTAAACGCATTAAGGAAACAAAAAATTAA

Domains

No domain identified.

3D structure

• AlphaFold DB: A0A7T4M293

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus mitis NCTC 12261	89.583	100	0.896
comGD/cglD	Streptococcus pneumoniae Rx1	91.729	92.361	0.847
comGD/cglD	Streptococcus pneumoniae D39	91.729	92.361	0.847
comGD/cglD	Streptococcus pneumoniae R6	91.729	92.361	0.847
comGD/cglD	Streptococcus mitis SK321	91.729	92.361	0.847
comGD/cglD	Streptococcus pneumoniae TIGR4	90.977	92.361	0.84
comYD	Streptococcus gordonii str. Challis substr. CH1	57.143	92.361	0.528
comYD	Streptococcus mutans UA140	47.287	89.583	0.424
comYD	Streptococcus mutans UA159	47.287	89.583	0.424