Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   I6H78_RS04465 Genome accession   NZ_CP066059
Coordinates   930510..930923 (-) Length   137 a.a.
NCBI ID   WP_000265643.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925510..935923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS04440 (I6H78_04440) - 926311..927138 (-) 828 WP_162837252.1 membrane protein insertase YidC -
  I6H78_RS04445 (I6H78_04445) rnpA 927113..927484 (-) 372 WP_000748120.1 ribonuclease P protein component -
  I6H78_RS04450 (I6H78_04450) - 927634..928824 (-) 1191 WP_198460190.1 acetate kinase -
  I6H78_RS04455 (I6H78_04455) comYH 928875..929828 (-) 954 WP_198460191.1 class I SAM-dependent methyltransferase Machinery gene
  I6H78_RS04460 (I6H78_04460) - 929887..930477 (-) 591 WP_198460192.1 class I SAM-dependent methyltransferase -
  I6H78_RS04465 (I6H78_04465) comGG/cglG 930510..930923 (-) 414 WP_000265643.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6H78_RS04470 (I6H78_04470) comGF/cglF 930901..931362 (-) 462 WP_000250706.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6H78_RS04475 (I6H78_04475) comGE/cglE 931325..931627 (-) 303 WP_000413374.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6H78_RS04480 (I6H78_04480) comGD/cglD 931590..932024 (-) 435 WP_198460193.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6H78_RS04485 (I6H78_04485) comGC/cglC 931987..932310 (-) 324 WP_000735798.1 competence type IV pilus major pilin ComGC Machinery gene
  I6H78_RS04490 (I6H78_04490) comGB/cglB 932312..933328 (-) 1017 WP_198460227.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6H78_RS04495 (I6H78_04495) comGA/cglA/cilD 933276..934217 (-) 942 WP_198460194.1 competence type IV pilus ATPase ComGA Machinery gene
  I6H78_RS04500 (I6H78_04500) - 934280..934645 (-) 366 WP_000286396.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15726.16 Da        Isoelectric Point: 10.5741

>NTDB_id=516957 I6H78_RS04465 WP_000265643.1 930510..930923(-) (comGG/cglG) [Streptococcus oralis strain FDAARGOS_1021]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHHKDFALNKEKLAAFAMAKRSKDKAEQESGERVFNLGKVRYQNTK
TGFATSVRMNKGNYEFLFPPMKIKEKKTDQKEEVATDSSNQSGKKKSEEKPEKKDNS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=516957 I6H78_RS04465 WP_000265643.1 930510..930923(-) (comGG/cglG) [Streptococcus oralis strain FDAARGOS_1021]
GTGTGGAAAAAGCAAAAAGTTAAGGCAGGCGTTCTCTTATATGCGGTTACCATGGCAGCCATTTTTAGCCTTTTGTTGCA
GTTTTATTTGAATCGGCAAGTAGCCCATCACAAAGACTTTGCCCTAAACAAAGAAAAGTTGGCAGCTTTTGCCATGGCCA
AGCGAAGTAAAGATAAGGCTGAGCAAGAAAGTGGGGAACGAGTCTTCAACTTAGGAAAAGTCAGGTATCAAAATACGAAA
ACAGGTTTTGCAACAAGTGTTCGTATGAATAAGGGCAACTATGAATTTCTTTTTCCTCCGATGAAAATCAAGGAAAAGAA
AACAGATCAAAAGGAAGAGGTAGCGACTGATTCAAGCAATCAATCAGGGAAGAAAAAATCAGAAGAAAAGCCTGAAAAGA
AAGACAATTCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

77.049

89.051

0.686
  comGG/cglG Streptococcus pneumoniae Rx1

78.632

85.401

0.672
  comGG/cglG Streptococcus pneumoniae D39

78.632

85.401

0.672
  comGG/cglG Streptococcus pneumoniae R6

78.632

85.401

0.672
  comGG/cglG Streptococcus pneumoniae TIGR4

78.632

85.401

0.672
  comGG/cglG Streptococcus mitis SK321

73.77

89.051

0.657