Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   I6G26_RS04005 Genome accession   NZ_CP065728
Coordinates   754395..754841 (+) Length   148 a.a.
NCBI ID   WP_197940301.1    Uniprot ID   -
Organism   Moraxella nonliquefaciens strain FDAARGOS_869     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 749395..759841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G26_RS03990 (I6G26_03990) - 750796..751968 (+) 1173 WP_067008118.1 D-alanyl-D-alanine carboxypeptidase family protein -
  I6G26_RS03995 (I6G26_03995) - 752155..753354 (+) 1200 WP_067008121.1 phosphoglycerate kinase -
  I6G26_RS04000 (I6G26_04000) - 753530..753859 (+) 330 WP_066893581.1 membrane lipoprotein lipid attachment site-containing protein -
  I6G26_RS04005 (I6G26_04005) pilA/pilA1 754395..754841 (+) 447 WP_197940301.1 pilin Machinery gene
  I6G26_RS04010 (I6G26_04010) - 755028..755477 (+) 450 WP_067008128.1 pilin -
  I6G26_RS04015 (I6G26_04015) tfpZ 755540..756298 (+) 759 WP_067008131.1 TfpX/TfpZ family type IV pilin accessory protein -
  I6G26_RS04020 (I6G26_04020) pilA/pilA1 756374..756757 (-) 384 WP_320158679.1 pilin Machinery gene
  I6G26_RS04025 (I6G26_04025) - 756814..757779 (-) 966 WP_067008136.1 IS110 family transposase -
  I6G26_RS04030 (I6G26_04030) serA 757987..759213 (-) 1227 WP_067008137.1 phosphoglycerate dehydrogenase -
  I6G26_RS04035 (I6G26_04035) - 759600..759788 (-) 189 WP_067008142.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15239.33 Da        Isoelectric Point: 6.2368

>NTDB_id=513609 I6G26_RS04005 WP_197940301.1 754395..754841(+) (pilA/pilA1) [Moraxella nonliquefaciens strain FDAARGOS_869]
MNAQKGFTLIELMIVIAIIGILAAIALPAYQDYTARAQATEAIKATAGVQSDIGVFVADQNRYPQAAEVAGVTNLAGKYF
SAGKVTITGGDAATVDTPTTPSVIQVEFDSGANKSKTVTLTPTAANGQISKWTCGGTIDSGRLPKSCQ

Nucleotide


Download         Length: 447 bp        

>NTDB_id=513609 I6G26_RS04005 WP_197940301.1 754395..754841(+) (pilA/pilA1) [Moraxella nonliquefaciens strain FDAARGOS_869]
ATGAACGCTCAAAAAGGTTTTACCCTGATTGAATTGATGATTGTTATCGCCATTATTGGTATCCTAGCAGCTATCGCATT
GCCTGCGTATCAAGACTACACCGCTCGTGCGCAAGCAACCGAAGCCATAAAAGCCACAGCAGGTGTGCAGTCTGACATCG
GTGTGTTTGTTGCTGACCAAAACCGCTATCCACAAGCAGCAGAAGTTGCAGGGGTTACTAACTTAGCTGGTAAATACTTT
TCAGCAGGTAAAGTTACAATAACTGGTGGTGATGCTGCTACTGTTGACACACCAACCACCCCAAGTGTTATTCAAGTGGA
GTTTGATTCTGGTGCTAATAAAAGCAAGACAGTTACCTTAACCCCAACTGCTGCAAATGGTCAAATCTCAAAATGGACTT
GTGGTGGCACAATCGACTCAGGCCGTCTGCCTAAGAGCTGTCAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

58.861

100

0.628
  comP Acinetobacter baylyi ADP1

43.791

100

0.453
  pilE Neisseria gonorrhoeae MS11

39.053

100

0.446
  pilE Neisseria gonorrhoeae strain FA1090

38.462

100

0.439
  pilA2 Legionella pneumophila str. Paris

41.558

100

0.432
  pilA2 Legionella pneumophila strain ERS1305867

41.558

100

0.432
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.267

100

0.405
  pilA Haemophilus influenzae 86-028NP

39.437

95.946

0.378
  pilA Vibrio cholerae C6706

37.333

100

0.378
  pilA Vibrio cholerae strain A1552

37.333

100

0.378
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.333

100

0.378
  pilA Pseudomonas aeruginosa PAK

36.424

100

0.372