Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   I6G33_RS10605 Genome accession   NZ_CP065721
Coordinates   2234984..2235508 (+) Length   174 a.a.
NCBI ID   WP_003302811.1    Uniprot ID   -
Organism   Stutzerimonas degradans strain FDAARGOS_876     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229984..2240508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G33_RS10585 (I6G33_10585) coaE 2230157..2230762 (-) 606 WP_102827576.1 dephospho-CoA kinase -
  I6G33_RS10590 (I6G33_10590) pilD 2230867..2231736 (-) 870 WP_102827577.1 A24 family peptidase Machinery gene
  I6G33_RS10595 (I6G33_10595) pilC 2231740..2232957 (-) 1218 WP_102827578.1 type II secretion system F family protein Machinery gene
  I6G33_RS10600 (I6G33_10600) pilB 2232959..2234662 (-) 1704 WP_102827579.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6G33_RS10605 (I6G33_10605) pilE 2234984..2235508 (+) 525 WP_003302811.1 pilin Machinery gene
  I6G33_RS10610 (I6G33_10610) tfpZ 2235669..2236403 (+) 735 WP_102827580.1 TfpX/TfpZ family type IV pilin accessory protein -
  I6G33_RS10615 (I6G33_10615) cysN 2236714..2238612 (-) 1899 WP_102827581.1 sulfate adenylyltransferase subunit CysN -
  I6G33_RS10620 (I6G33_10620) cysD 2238625..2239542 (-) 918 WP_008567291.1 sulfate adenylyltransferase subunit CysD -
  I6G33_RS10625 (I6G33_10625) - 2239708..2240466 (-) 759 WP_008567292.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 17634.01 Da        Isoelectric Point: 4.5880

>NTDB_id=513495 I6G33_RS10605 WP_003302811.1 2234984..2235508(+) (pilE) [Stutzerimonas degradans strain FDAARGOS_876]
MKAQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTARAKISEAIVAASSPKSLVSEAFQSDSLAGITAAATEYNARAQA
EKQSKVVNDIQIDTTNGVITVTLESATQAGLPTDAAGTTLTFTPNVQGAVPAAGASGAIDWACASDTNTTATARGLVVGA
AGTLPAKYAPSECR

Nucleotide


Download         Length: 525 bp        

>NTDB_id=513495 I6G33_RS10605 WP_003302811.1 2234984..2235508(+) (pilE) [Stutzerimonas degradans strain FDAARGOS_876]
ATGAAAGCGCAGATGCAGAAGGGCTTTACCCTGATCGAATTGATGATCGTGGTGGCGATCATTGGTATTTTGGCGGCGGT
GGCACTGCCGGCTTATCAGGACTACACCGCTCGCGCCAAAATTTCCGAGGCTATAGTTGCAGCTTCGTCCCCGAAAAGCT
TGGTCAGCGAAGCCTTCCAAAGTGACAGCTTGGCAGGGATTACTGCAGCTGCAACTGAGTATAACGCTCGTGCTCAAGCG
GAGAAGCAAAGCAAGGTTGTTAACGACATTCAAATCGATACTACCAATGGCGTTATTACTGTGACTTTGGAAAGTGCTAC
TCAGGCTGGCCTGCCGACCGATGCAGCCGGTACTACTCTGACTTTCACTCCGAATGTTCAAGGAGCCGTGCCAGCAGCGG
GCGCAAGCGGCGCCATTGACTGGGCTTGCGCTTCTGATACCAATACCACTGCTACAGCCCGTGGCCTTGTAGTGGGTGCA
GCGGGTACCCTGCCCGCTAAGTACGCCCCCTCCGAATGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-174)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

55.026

100

0.598
  pilA Ralstonia pseudosolanacearum GMI1000

42.391

100

0.448
  pilA2 Legionella pneumophila strain ERS1305867

43.195

97.126

0.42
  pilA2 Legionella pneumophila str. Paris

43.195

97.126

0.42
  pilA/pilA1 Eikenella corrodens VA1

36.364

100

0.391
  comP Acinetobacter baylyi ADP1

38.857

100

0.391
  pilE Neisseria gonorrhoeae MS11

36.813

100

0.385
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.782

100

0.368
  pilE Neisseria gonorrhoeae strain FA1090

36.158

100

0.368