Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6G33_RS10595 Genome accession   NZ_CP065721
Coordinates   2231740..2232957 (-) Length   405 a.a.
NCBI ID   WP_102827578.1    Uniprot ID   -
Organism   Stutzerimonas degradans strain FDAARGOS_876     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226740..2237957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G33_RS10560 (I6G33_10560) petA 2227143..2227736 (-) 594 WP_102827573.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  I6G33_RS10565 (I6G33_10565) rpsI 2227986..2228378 (-) 393 WP_009867980.1 30S ribosomal protein S9 -
  I6G33_RS10570 (I6G33_10570) rplM 2228393..2228821 (-) 429 WP_009867981.1 50S ribosomal protein L13 -
  I6G33_RS10575 (I6G33_10575) - 2229234..2229917 (+) 684 WP_102827574.1 energy-coupling factor ABC transporter permease -
  I6G33_RS10580 (I6G33_10580) yacG 2229963..2230160 (-) 198 WP_102827575.1 DNA gyrase inhibitor YacG -
  I6G33_RS10585 (I6G33_10585) coaE 2230157..2230762 (-) 606 WP_102827576.1 dephospho-CoA kinase -
  I6G33_RS10590 (I6G33_10590) pilD 2230867..2231736 (-) 870 WP_102827577.1 A24 family peptidase Machinery gene
  I6G33_RS10595 (I6G33_10595) pilC 2231740..2232957 (-) 1218 WP_102827578.1 type II secretion system F family protein Machinery gene
  I6G33_RS10600 (I6G33_10600) pilB 2232959..2234662 (-) 1704 WP_102827579.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6G33_RS10605 (I6G33_10605) pilE 2234984..2235508 (+) 525 WP_003302811.1 pilin Machinery gene
  I6G33_RS10610 (I6G33_10610) tfpZ 2235669..2236403 (+) 735 WP_102827580.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44129.89 Da        Isoelectric Point: 9.9609

>NTDB_id=513493 I6G33_RS10595 WP_102827578.1 2231740..2232957(-) (pilC) [Stutzerimonas degradans strain FDAARGOS_876]
MAQKAIKTSVFTWEGTDRKGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSLFGAGKKIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDELKQEVAAGNSFAASLRKKPLYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVIVVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFVVLAGLISAAFAFK
QAHRRSEKFRNWFDRVLLKVPVVGEILYKSAVARFTRTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKNDVSTGM
QLNFSMRTTGTFPSMAVQMTAIGEESGSLDEMLGKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=513493 I6G33_RS10595 WP_102827578.1 2231740..2232957(-) (pilC) [Stutzerimonas degradans strain FDAARGOS_876]
ATGGCGCAGAAAGCGATAAAAACCAGTGTCTTCACCTGGGAAGGGACCGACCGCAAGGGCGCGAAGATCAAGGGAGAGCT
GAGTGGGGTCAGCCCCGCGCTGGTCAAGGCGCAGCTACGCAAGCAGGGTGTCAACCCGCAAAAGGTGCGTAAGAAGTCGG
TGTCATTGTTCGGTGCCGGCAAGAAGATCAAGCCGCTGGACATCGCGCTGTTCACGCGGCAGATGGCGACCATGATGAAG
GCGGGGGTCCCACTGTTGCAGTCATTCGACATCATCGGTGAGGGCTTCGACAATCCCAATATGCGCAAGCTGGTGGATGA
GCTGAAGCAGGAAGTTGCAGCGGGCAATAGTTTCGCAGCGTCGCTGCGCAAGAAACCGCTATATTTTGACGACCTGTATT
GCAATCTGGTGGATTCCGGCGAGCAGTCTGGCTCGCTGGAAACGCTGCTTGATCGCGTGGCAACCTACAAGGAAAAGACT
GAGGCCCTCAAGGCCAAGATCAAGAAGGCAATGAACTATCCGATTGCGGTGATCGTGGTGGCGGTTATCGTTTCGGCGAT
TTTGCTGATCAAGGTAGTGCCGCAGTTTCAGGAGGTGTTTGCCAACTTCGGCGCCGAGCTGCCGGCGTTTACGCTGATGG
TGATCGGCCTGTCGGAAGCGCTGCAGGAGTGGTGGTTCGTTGTCCTGGCGGGCCTGATCAGCGCGGCCTTTGCCTTCAAG
CAAGCGCACCGGCGCTCCGAGAAATTTCGCAATTGGTTCGATCGTGTGCTGCTGAAGGTGCCGGTCGTGGGCGAAATCCT
TTACAAGTCCGCCGTCGCCCGCTTCACTCGTACGCTGTCGACGACCTTCGCCGCTGGCGTACCGCTTGTCGATGCATTGG
ATTCGGTAGCGGGGGCGACTGGGAACGTGGTGTTTCGCAATGCGACAATGAAAGTCAAGAATGATGTCTCCACCGGTATG
CAGCTGAACTTTTCGATGCGCACGACTGGCACGTTTCCTTCGATGGCGGTGCAGATGACCGCGATCGGCGAGGAATCCGG
CTCGCTTGATGAGATGCTGGGCAAGGTAGCCACCTTCTATGAGGATGAGGTGGACAATATGGTCGACGGCCTGACCAGCC
TGATGGAGCCGATGATCATGGCGGTGCTGGGCGTGCTGGTTGGGGGGTTGATCATCGCGATGTACTTGCCGATCTTCCAG
TTGGGAGCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.111

100

0.911
  pilC Acinetobacter baumannii D1279779

59.753

100

0.598
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

44.527

99.259

0.442
  pilG Neisseria meningitidis 44/76-A

44.527

99.259

0.442
  pilC Vibrio cholerae strain A1552

41.414

97.778

0.405
  pilC Vibrio campbellii strain DS40M4

40.404

97.778

0.395