Detailed information NTG0513492

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G33_RS10590
• Genome accession: NZ_CP065721
• Coordinates: 2230867..2231736 (-)
• Length: 289 a.a.
• NCBI ID: WP_102827577.1
• Uniprot ID: -
• Organism: Stutzerimonas degradans strain FDAARGOS_876
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2225867..2236736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G33_RS10555 (I6G33_10555)	-	2225932..2227143 (-)	1212	WP_102827572.1	cytochrome bc complex cytochrome b subunit	-
I6G33_RS10560 (I6G33_10560)	petA	2227143..2227736 (-)	594	WP_102827573.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
I6G33_RS10565 (I6G33_10565)	rpsI	2227986..2228378 (-)	393	WP_009867980.1	30S ribosomal protein S9	-
I6G33_RS10570 (I6G33_10570)	rplM	2228393..2228821 (-)	429	WP_009867981.1	50S ribosomal protein L13	-
I6G33_RS10575 (I6G33_10575)	-	2229234..2229917 (+)	684	WP_102827574.1	energy-coupling factor ABC transporter permease	-
I6G33_RS10580 (I6G33_10580)	yacG	2229963..2230160 (-)	198	WP_102827575.1	DNA gyrase inhibitor YacG	-
I6G33_RS10585 (I6G33_10585)	coaE	2230157..2230762 (-)	606	WP_102827576.1	dephospho-CoA kinase	-
I6G33_RS10590 (I6G33_10590)	pilD	2230867..2231736 (-)	870	WP_102827577.1	A24 family peptidase	Machinery gene
I6G33_RS10595 (I6G33_10595)	pilC	2231740..2232957 (-)	1218	WP_102827578.1	type II secretion system F family protein	Machinery gene
I6G33_RS10600 (I6G33_10600)	pilB	2232959..2234662 (-)	1704	WP_102827579.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6G33_RS10605 (I6G33_10605)	pilE	2234984..2235508 (+)	525	WP_003302811.1	pilin	Machinery gene
I6G33_RS10610 (I6G33_10610)	tfpZ	2235669..2236403 (+)	735	WP_102827580.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31865.95 Da
• Isoelectric Point: 8.0488

>NTDB_id=513492 I6G33_RS10590 WP_102827577.1 2230867..2231736(-) (pilD) [Stutzerimonas degradans strain FDAARGOS_876]
MMLFDFLASHTLAFVLCAALLGLLAGSFLNVVIYRLPLMMQREWQAQAREFLELPAESAGATFNLFLPPSRCPHCAHSIR
PWENIPLLSWMALRGRCSSCKKPIPARYPLVELASGLLSGYVAWHLGFTWQAGAMLLLTWGLLAMSLIDIDHQLLPDSLV
LPLLWLGLIVNSGDLFVSLVDALWGAIAGYLSLWTVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVLGSILLRIRRAAQGTPIPFGPYLAIAGWVALLWGDSITRSYLQFAHI

Nucleotide

• Length: 870 bp

>NTDB_id=513492 I6G33_RS10590 WP_102827577.1 2230867..2231736(-) (pilD) [Stutzerimonas degradans strain FDAARGOS_876]
ATGATGCTGTTTGATTTTCTGGCCAGCCATACGCTGGCCTTTGTTTTGTGTGCGGCGCTGCTTGGGCTGTTGGCAGGCAG
CTTTCTCAATGTCGTCATCTATCGTCTTCCGCTCATGATGCAGCGCGAGTGGCAGGCGCAGGCGCGGGAGTTTCTGGAGC
TGCCGGCCGAGTCGGCTGGGGCGACGTTCAACCTATTCCTGCCACCTTCGCGGTGTCCGCATTGCGCACATTCGATTCGG
CCATGGGAGAACATTCCGTTACTGAGCTGGATGGCACTACGGGGCAGATGTTCGTCTTGCAAGAAGCCTATCCCTGCTCG
TTATCCGCTGGTTGAGCTTGCTAGCGGGCTTCTCTCGGGTTACGTGGCTTGGCACTTAGGCTTTACTTGGCAGGCAGGCG
CCATGCTGTTGCTGACCTGGGGGCTGCTGGCGATGAGTCTGATCGATATCGACCATCAGCTGTTGCCGGATTCGTTGGTG
CTGCCGCTGCTCTGGTTGGGGCTGATTGTTAATAGTGGTGACCTTTTTGTGTCGCTGGTAGATGCCCTGTGGGGGGCGAT
TGCCGGGTACCTGAGTCTGTGGACGGTTTACTGGCTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGGTACGGTGACT
TCAAGCTGCTTGCGATGATCGGTGCCTGGGGCGGTTGGCAAGTACTGCCGCTCACCATTCTGCTGTCCTCGCTGGTAGGG
GCCGTGCTTGGCAGCATCCTGCTGCGCATACGCCGTGCTGCGCAGGGCACGCCGATTCCTTTCGGACCTTATCTGGCTAT
TGCAGGGTGGGTCGCGTTGTTGTGGGGCGATTCCATTACTCGTAGTTATCTGCAGTTCGCGCATATCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.777	94.464	0.536
pilD	Vibrio campbellii strain DS40M4	53.114	94.464	0.502
pilD	Acinetobacter nosocomialis M2	50.178	97.232	0.488
pilD	Acinetobacter baumannii D1279779	49.822	97.232	0.484
pilD	Neisseria gonorrhoeae MS11	50.376	92.042	0.464