Detailed information NTG0510215

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: ST90729_RS08840
• Genome accession: NZ_CP065480
• Coordinates: 1710669..1710995 (-)
• Length: 108 a.a.
• NCBI ID: WP_002946126.1
• Uniprot ID: A0A0E2Q1B3
• Organism: Streptococcus thermophilus strain 90729
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1705669..1715995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST90729_RS08800	-	1705936..1706361 (-)	426	WP_087010196.1	CPBP family intramembrane glutamic endopeptidase	-
ST90729_RS08805 (ST90729_08770)	-	1706604..1706801 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
ST90729_RS08810 (ST90729_08775)	-	1707050..1708243 (-)	1194	WP_014608740.1	acetate kinase	-
ST90729_RS08815 (ST90729_08780)	comYH	1708299..1709255 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
ST90729_RS08820 (ST90729_08785)	comGG	1709300..1709617 (-)	318	WP_141326604.1	competence type IV pilus minor pilin ComGG	-
ST90729_RS08825 (ST90729_08790)	comYF	1709595..1710032 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
ST90729_RS08830 (ST90729_08795)	comGE	1710016..1710309 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
ST90729_RS08835 (ST90729_08800)	comYD	1710281..1710709 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
ST90729_RS08840 (ST90729_08805)	comYC	1710669..1710995 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
ST90729_RS08845 (ST90729_08810)	comYB	1710992..1712092 (-)	1101	WP_271307389.1	competence type IV pilus assembly protein ComGB	Machinery gene
ST90729_RS08850 (ST90729_08815)	comGA/cglA/cilD	1711974..1712915 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
ST90729_RS08855 (ST90729_08820)	-	1712996..1713358 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 108 a.a.
• Molecular weight: 11914.00 Da
• Isoelectric Point: 9.9219

>NTDB_id=510215 ST90729_RS08840 WP_002946126.1 1710669..1710995(-) (comYC) [Streptococcus thermophilus strain 90729]
MKLMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS
EGQITQKQADSYNDYYAKHGGESRSVAN

Nucleotide

• Length: 327 bp

>NTDB_id=510215 ST90729_RS08840 WP_002946126.1 1710669..1710995(-) (comYC) [Streptococcus thermophilus strain 90729]
ATGAAATTGATGTTAAAAAAATTGAATGCCGTTAAATTACGAGCCTTTACTCTGATTGAAATGCTAGTCGTACTTCTCAT
TATCAGTATTCTCCTTTTGCTCTTTGTTCCTAACTTAAGCAAGCAGAAGGATTCCGTTAAGGAAACTGGAAATGCGGCTG
TAGTCAAGGTCGTGGATTCTCAGGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTGGCAGCTCTTGTTTCA
GAAGGTCAAATTACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGC
CAATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (14-34)

3D structure

• AlphaFold DB: A0A0E2Q1B3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus mutans UA140	69.231	96.296	0.667
comYC	Streptococcus mutans UA159	69.231	96.296	0.667
comYC	Streptococcus gordonii str. Challis substr. CH1	63.81	97.222	0.62
comGC/cglC	Streptococcus mitis SK321	62.264	98.148	0.611
comGC/cglC	Streptococcus mitis NCTC 12261	58.333	100	0.583
comGC/cglC	Streptococcus pneumoniae D39	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae R6	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae Rx1	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae TIGR4	58.491	98.148	0.574
comGC	Lactococcus lactis subsp. cremoris KW2	56.604	98.148	0.556
comYC	Streptococcus suis isolate S10	60.227	81.481	0.491
comGC	Staphylococcus aureus MW2	50	72.222	0.361
comGC	Staphylococcus aureus N315	50	72.222	0.361