Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   SMULJ23_RS01390 Genome accession   NC_017768
Coordinates   308707..309459 (+) Length   250 a.a.
NCBI ID   WP_002262114.1    Uniprot ID   Q8DS93
Organism   Streptococcus mutans LJ23     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 303707..314459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS01370 (SMULJ23_0255) dnaI 304626..305525 (+) 900 WP_002265451.1 primosomal protein DnaI -
  SMULJ23_RS01375 (SMULJ23_0256) der 305538..306848 (+) 1311 WP_002292004.1 ribosome biogenesis GTPase Der -
  SMULJ23_RS01380 (SMULJ23_0257) - 306923..307549 (+) 627 WP_014677755.1 hypothetical protein -
  SMULJ23_RS01385 (SMULJ23_0258) - 307597..308235 (+) 639 WP_002292006.1 VTT domain-containing protein -
  SMULJ23_RS01390 (SMULJ23_0259) comE/blpR 308707..309459 (+) 753 WP_002262114.1 response regulator transcription factor Regulator
  SMULJ23_RS01395 (SMULJ23_0260) comD/blpH 309456..310781 (+) 1326 WP_002292008.1 GHKL domain-containing protein Regulator
  SMULJ23_RS01400 (SMULJ23_0261) comC/blpC 310923..311063 (-) 141 WP_002270250.1 ComC/BlpC family leader-containing pheromone/bacteriocin Regulator
  SMULJ23_RS01405 (SMULJ23_0262) cipB 311330..311560 (+) 231 WP_002265368.1 Blp family class II bacteriocin Regulator
  SMULJ23_RS01410 (SMULJ23_0263) - 311691..312092 (+) 402 WP_002310604.1 hypothetical protein -
  SMULJ23_RS01415 (SMULJ23_0265) - 313473..313886 (+) 414 Protein_260 hypothetical protein -
  SMULJ23_RS01420 (SMULJ23_0266) - 314038..314442 (+) 405 WP_002263912.1 hypothetical protein -

Sequence


Protein


Download         Length: 250 a.a.        Molecular weight: 29358.71 Da        Isoelectric Point: 8.2551

>NTDB_id=50740 SMULJ23_RS01390 WP_002262114.1 308707..309459(+) (comE/blpR) [Streptococcus mutans LJ23]
MISIFVLEDDFLQQGRLETTIAAIMKEKNWSYKELTIFGKPQQLIDAIPEKGNHQIFFLDIEIKKEEKKGLEVANQIRQH
NPSAVIVFVTTHSEFMPLTFQYQVSALDFIDKSLNPEEFSHRIESALYYAMENSQKNGQSEELFIFHSSETQFQVPFAEI
LYFETSSTAHKLCLYTYDERIEFYGSMTDIVKMDKRLFQCHRSFIVNPANITRIDRKKRLAYFRNNKSCLISRTKLTKLR
AVIADQRRAK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=50740 SMULJ23_RS01390 WP_002262114.1 308707..309459(+) (comE/blpR) [Streptococcus mutans LJ23]
ATGATTTCTATTTTTGTATTGGAAGATGATTTTTTACAACAAGGACGTCTTGAAACCACCATTGCAGCTATCATGAAAGA
AAAAAATTGGTCTTATAAAGAATTGACTATTTTTGGAAAACCACAACAACTTATTGACGCTATCCCTGAAAAGGGCAATC
ACCAGATTTTCTTTTTGGATATTGAAATCAAAAAAGAGGAAAAGAAAGGACTGGAAGTAGCCAATCAGATTAGACAGCAT
AATCCTAGTGCAGTTATTGTCTTTGTCACGACACATTCTGAGTTTATGCCCCTCACTTTTCAGTATCAGGTATCTGCTTT
GGATTTTATTGATAAATCTTTGAATCCTGAGGAGTTCTCCCACCGCATTGAATCAGCGCTGTATTATGCTATGGAAAACA
GCCAGAAGAATGGTCAATCAGAGGAACTTTTTATTTTCCATTCATCTGAAACTCAGTTTCAGGTCCCTTTTGCTGAGATT
CTGTATTTTGAAACATCTTCAACAGCCCATAAGCTCTGCCTTTATACTTATGATGAACGGATTGAATTCTACGGCAGTAT
GACTGACATTGTTAAAATGGATAAGAGACTTTTTCAGTGCCATCGCTCTTTTATTGTCAATCCTGCCAATATTACCCGTA
TTGATCGGAAAAAACGCTTGGCCTATTTTCGAAATAATAAGTCTTGTCTTATTTCACGAACTAAGTTAACAAAACTGAGA
GCTGTGATTGCTGATCAAAGGAGAGCAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DS93

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

100

100

1

  comE/comE1 Streptococcus equinus JB1

46.888

96.4

0.452

  comE Streptococcus mitis NCTC 12261

41.7

98.8

0.412

  comE Streptococcus infantis strain Atu-4

41.7

98.8

0.412

  comE Streptococcus pneumoniae D39

41.296

98.8

0.408

  comE Streptococcus pneumoniae Rx1

41.296

98.8

0.408

  comE Streptococcus pneumoniae R6

41.296

98.8

0.408

  comE Streptococcus pneumoniae TIGR4

41.296

98.8

0.408

  comE Streptococcus mitis SK321

41.296

98.8

0.408

  comE/comE2 Streptococcus equinus JB1

40.664

96.4

0.392

  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

37.551

98

0.368

  comE/comE2 Streptococcus gordonii strain NCTC7865

37.551

98

0.368


Multiple sequence alignment