Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6L84_RS01550 Genome accession   NZ_CP077224
Coordinates   287350..289008 (+) Length   552 a.a.
NCBI ID   WP_060554038.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 282350..294008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS01520 (I6L84_01520) - 282710..283552 (+) 843 WP_060554042.1 NAD(P)H-hydrate dehydratase -
  I6L84_RS01525 (I6L84_01525) xseA 283708..285048 (+) 1341 WP_060554041.1 exodeoxyribonuclease VII large subunit -
  I6L84_RS01530 (I6L84_01530) - 285026..285238 (+) 213 WP_060554040.1 exodeoxyribonuclease VII small subunit -
  I6L84_RS01535 (I6L84_01535) - 285235..286110 (+) 876 WP_060554039.1 polyprenyl synthetase family protein -
  I6L84_RS01540 (I6L84_01540) - 286103..286918 (+) 816 WP_045501931.1 TlyA family RNA methyltransferase -
  I6L84_RS01545 (I6L84_01545) - 286911..287342 (+) 432 WP_053794832.1 arginine repressor -
  I6L84_RS01550 (I6L84_01550) recN 287350..289008 (+) 1659 WP_060554038.1 DNA repair protein RecN Machinery gene
  I6L84_RS01555 (I6L84_01555) - 289046..289774 (+) 729 WP_060554037.1 metallophosphoesterase family protein -
  I6L84_RS01560 (I6L84_01560) - 289838..290671 (+) 834 WP_045501950.1 DegV family protein -
  I6L84_RS01565 (I6L84_01565) - 290816..291091 (+) 276 WP_008809079.1 HU family DNA-binding protein -
  I6L84_RS01570 (I6L84_01570) perR 291458..291928 (+) 471 WP_012000173.1 peroxide-responsive transcriptional repressor PerR -
  I6L84_RS01575 (I6L84_01575) - 292090..292782 (+) 693 WP_008809077.1 phosphoglycerate mutase -
  I6L84_RS01580 (I6L84_01580) - 292892..293107 (+) 216 WP_008809076.1 YozE family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62307.37 Da        Isoelectric Point: 4.6249

>NTDB_id=505764 I6L84_RS01550 WP_060554038.1 287350..289008(+) (recN) [Streptococcus gordonii strain FDAARGOS 1454]
MLLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGATKAEIEGLFSLGNSSTLEAIF
EEQGLELTDELIIRREILQNGRSVSRVNGQLVNLSVLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAF
YQETFDHYRQLRKQVLTLHKNQEEHKARIEMLEFQMAEIDSASLKTGEDKALHQERDRLLNHKLIADTLTNAYAMLDNED
FSSLANVRSAMNDMESIEEYDPTYKELSSSLSETYYVLEDVTKRLEDILDGLDFDGNRLMQVESRLDLINSITRKYGGQV
DDVLEYFSQISKEYQLLTGSHSSSEDLEAELKDLEKRLVNFAGQLSQARHELAKQLESEIKQELQDLYMEKANFQVQFNK
SKFNREGNEQVEFYISTNPGESFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADKQFFIEKISDENSTVSTVRLLDFDERVEEIAKMLAGENVTEAALSQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=505764 I6L84_RS01550 WP_060554038.1 287350..289008(+) (recN) [Streptococcus gordonii strain FDAARGOS 1454]
ATGTTATTAGAAATTTCTATAAAAAACTTTGCTATTATTGAAGAAATCTCTCTTCATTTTGACCAAGGGATGACGGTCCT
GACCGGTGAAACTGGGGCAGGGAAGTCCATCATTATTGATGCTATGAATATGATGCTGGGTAGCCGTGCTACTACTGATG
TCATTCGTCATGGAGCTACTAAGGCTGAAATTGAAGGATTGTTTTCATTGGGAAATAGCTCAACTTTAGAAGCAATTTTT
GAAGAGCAGGGCTTGGAATTGACTGATGAACTTATTATCCGCCGAGAAATTCTGCAAAATGGCCGTAGCGTCAGCCGGGT
TAATGGACAGTTAGTTAACCTATCAGTTTTGAAGGCTATTGGTCAACATTTAGTAGATATTCATGGCCAACATGATCAGG
AAGAATTAATGCGTCCTCAGCTTCATATAGCCATGCTGGATGAGTTTGGAGATGAGGATTTCGTTGCCTTGAAAGCCTTC
TATCAAGAAACCTTTGATCACTATCGACAGCTTCGTAAACAAGTTCTGACCTTGCATAAAAATCAAGAGGAGCATAAGGC
TCGCATTGAAATGCTAGAATTTCAGATGGCTGAAATTGATAGTGCTTCCTTGAAAACTGGTGAAGACAAAGCTCTCCACC
AAGAACGTGATCGCTTACTCAATCACAAGCTGATTGCTGATACCTTGACCAATGCATACGCTATGTTGGATAACGAGGAT
TTTTCTAGTCTGGCTAATGTGCGTTCAGCTATGAACGATATGGAGTCTATTGAAGAATATGACCCAACATACAAGGAATT
GTCTTCTAGTCTTTCTGAGACCTATTACGTTCTGGAAGATGTGACTAAACGGTTGGAGGATATCTTAGATGGCCTAGATT
TTGATGGCAACCGCTTGATGCAGGTTGAAAGTCGTTTAGATTTGATTAACAGTATCACTCGTAAATATGGTGGCCAAGTA
GATGATGTTTTAGAATATTTTTCACAAATATCGAAAGAGTACCAGCTACTGACAGGCAGTCACTCATCTTCTGAAGATTT
AGAGGCAGAACTTAAAGATTTAGAAAAGCGTTTGGTAAATTTTGCTGGACAGCTTAGCCAAGCAAGACATGAGTTGGCTA
AACAGCTTGAGTCGGAGATTAAGCAGGAACTGCAAGATCTCTATATGGAAAAAGCGAATTTTCAAGTTCAATTTAACAAG
AGCAAGTTTAACCGTGAAGGTAATGAGCAAGTTGAGTTTTATATTTCAACTAATCCTGGAGAAAGCTTTAAGCCTTTAGT
TAAGGTTGCATCAGGTGGGGAATTATCTCGTCTGATGCTTGCAATTAAATCAGCTTTCTCTCGGAAAGAAGGAAAGACTA
GTATAGTCTTTGACGAAGTTGATACAGGAGTTTCGGGTCGTGTAGCCCAAGCTATTGCACAAAAAATCCATAAGATTGGC
AGTAATGGTCAGGTTTTAGCAATCTCTCATCTGCCACAAGTCATTGCCATTGCAGACAAGCAATTCTTTATTGAAAAAAT
TTCTGATGAAAATTCTACTGTTTCAACTGTTCGTCTCTTGGACTTCGATGAGCGAGTGGAAGAAATTGCTAAGATGTTAG
CTGGTGAAAATGTAACAGAAGCCGCTTTGAGCCAGGCGCGTGAATTATTAAAGAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.439

100

0.469