Detailed information NTG0505766

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DKB71_RS28800
• Genome accession: NZ_CP064949
• Coordinates: 6334949..6335821 (+)
• Length: 290 a.a.
• NCBI ID: WP_323627336.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PLMAX
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6329949..6340821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKB71_RS28780 (DKB71_28445)	-	6332364..6332717 (-)	354	WP_274074573.1	BON domain-containing protein	-
DKB71_RS28785 (DKB71_28450)	pilA	6333026..6333445 (-)	420	WP_274074572.1	pilin	Machinery gene
DKB71_RS28790 (DKB71_28455)	-	6333457..6333630 (+)	174	WP_408598903.1	hypothetical protein	-
DKB71_RS28795 (DKB71_28460)	pilC	6333730..6334947 (+)	1218	WP_408598905.1	type II secretion system F family protein	Machinery gene
DKB71_RS28800 (DKB71_28465)	pilD	6334949..6335821 (+)	873	WP_323627336.1	A24 family peptidase	Machinery gene
DKB71_RS28805 (DKB71_28470)	coaE	6335818..6336441 (+)	624	WP_408598907.1	dephospho-CoA kinase	-
DKB71_RS28810 (DKB71_28475)	yacG	6336438..6336638 (+)	201	WP_060543361.1	DNA gyrase inhibitor YacG	-
DKB71_RS28815 (DKB71_28480)	-	6336847..6337407 (+)	561	WP_274074567.1	magnesium transporter	-
DKB71_RS28820 (DKB71_28485)	-	6337440..6337757 (-)	318	WP_408598910.1	cytochrome C oxidase subunit IV family protein	-
DKB71_RS28825 (DKB71_28490)	-	6337771..6338484 (-)	714	WP_274074565.1	heme-copper oxidase subunit III family protein	-
DKB71_RS28830 (DKB71_28495)	-	6338491..6339180 (-)	690	WP_408598912.1	cytochrome c oxidase subunit 3	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32273.66 Da
• Isoelectric Point: 8.0728

>NTDB_id=505766 DKB71_RS28800 WP_323627336.1 6334949..6335821(+) (pilD) [Pseudomonas sp. PLMAX]
MPLNEILIHFPLAFVVVAGVVGLLVGSFLNVLVWRLPKMLEREWRVQAHDILGLPGETPLPTFNLMLPHSQCPHCGHRIR
AWENIPVLSFLFLRGRCSACATPISKRYPLTELACALLSAFIAWHFGFGWQAGMAMLLTWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSLELFVSLPEALWGAIAGYMTLWTVFWVFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTIVLSSVVG
AIIGVIYLRLRKAQTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=505766 DKB71_RS28800 WP_323627336.1 6334949..6335821(+) (pilD) [Pseudomonas sp. PLMAX]
ATGCCATTGAACGAAATCCTGATCCACTTCCCGCTGGCTTTCGTCGTCGTCGCCGGGGTAGTCGGCCTGCTGGTTGGCAG
CTTCCTCAACGTACTGGTCTGGCGCCTGCCGAAAATGCTCGAACGCGAGTGGCGCGTGCAGGCCCACGACATCCTCGGCC
TGCCCGGCGAAACGCCGCTGCCGACCTTCAATCTGATGCTGCCCCACTCCCAGTGCCCACACTGCGGTCACCGGATTCGT
GCCTGGGAAAACATTCCGGTATTGAGCTTTCTGTTCCTGCGCGGGCGCTGTTCGGCCTGTGCGACGCCGATCAGCAAACG
TTATCCTTTGACCGAACTGGCCTGCGCGTTGCTGTCGGCGTTCATTGCCTGGCACTTCGGGTTCGGCTGGCAAGCCGGCA
TGGCGATGCTCCTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGCTGCCGGATGTGCTGGTG
CTGCCGCTGATGTGGCTCGGGCTGATCGTCAACAGCCTCGAGCTGTTCGTGTCATTGCCCGAGGCGTTGTGGGGCGCAAT
TGCCGGCTACATGACGCTGTGGACGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGATGGCATGGGTCATGGCGACT
TCAAGCTGCTGGCGATGTTTGGCGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGATCGTCCTGTCGTCCGTGGTGGGT
GCGATCATCGGCGTGATTTACCTGCGCCTGCGCAAGGCGCAAACATCGACGCCAATCCCTTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTCTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.482	97.241	0.51
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445
pilD	Acinetobacter baumannii D1279779	47.08	94.483	0.445
pilD	Acinetobacter nosocomialis M2	46.35	94.483	0.438