Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DKB71_RS28795 Genome accession   NZ_CP064949
Coordinates   6333730..6334947 (+) Length   405 a.a.
NCBI ID   WP_408598905.1    Uniprot ID   -
Organism   Pseudomonas sp. PLMAX     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6328730..6339947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS28775 (DKB71_28440) - 6329189..6332143 (+) 2955 WP_408598900.1 DUF748 domain-containing protein -
  DKB71_RS28780 (DKB71_28445) - 6332364..6332717 (-) 354 WP_274074573.1 BON domain-containing protein -
  DKB71_RS28785 (DKB71_28450) pilA 6333026..6333445 (-) 420 WP_274074572.1 pilin Machinery gene
  DKB71_RS28790 (DKB71_28455) - 6333457..6333630 (+) 174 WP_408598903.1 hypothetical protein -
  DKB71_RS28795 (DKB71_28460) pilC 6333730..6334947 (+) 1218 WP_408598905.1 type II secretion system F family protein Machinery gene
  DKB71_RS28800 (DKB71_28465) pilD 6334949..6335821 (+) 873 WP_323627336.1 A24 family peptidase Machinery gene
  DKB71_RS28805 (DKB71_28470) coaE 6335818..6336441 (+) 624 WP_408598907.1 dephospho-CoA kinase -
  DKB71_RS28810 (DKB71_28475) yacG 6336438..6336638 (+) 201 WP_060543361.1 DNA gyrase inhibitor YacG -
  DKB71_RS28815 (DKB71_28480) - 6336847..6337407 (+) 561 WP_274074567.1 magnesium transporter -
  DKB71_RS28820 (DKB71_28485) - 6337440..6337757 (-) 318 WP_408598910.1 cytochrome C oxidase subunit IV family protein -
  DKB71_RS28825 (DKB71_28490) - 6337771..6338484 (-) 714 WP_274074565.1 heme-copper oxidase subunit III family protein -
  DKB71_RS28830 (DKB71_28495) - 6338491..6339180 (-) 690 WP_408598912.1 cytochrome c oxidase subunit 3 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44180.93 Da        Isoelectric Point: 9.7937

>NTDB_id=505765 DKB71_RS28795 WP_408598905.1 6333730..6334947(+) (pilC) [Pseudomonas sp. PLMAX]
MAVKAASTSVYSWEGTDRKGAKVTGELSGQNPALIKAQLRKQGINPGKVRRKSTSMFKLGKRITPQDIALFTRQMATMMK
AGVPLLHSFDIIGEGFDNPAMRKLIDEVKQDVAAGNSFATALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLIVVCVAIIVTAILLIKVVPQFESVFKGFGAELPAFTLMVIDLSQWLQAWWWMLLGALSAGVFAAR
HALKTSQGFRDRMDTWLLKLPLAGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIRQDVATGM
QLNFSMRTTGIFPNMAISMTAIGEESGALDDMLDKVAGFYEDEVDNLVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=505765 DKB71_RS28795 WP_408598905.1 6333730..6334947(+) (pilC) [Pseudomonas sp. PLMAX]
ATGGCAGTCAAGGCAGCAAGCACCAGCGTGTACAGCTGGGAAGGCACAGACAGGAAAGGCGCGAAGGTGACGGGCGAGCT
GAGCGGCCAGAACCCGGCACTGATCAAGGCGCAATTGCGCAAGCAAGGCATCAATCCCGGCAAGGTGCGCAGGAAATCCA
CGTCGATGTTCAAGCTGGGCAAACGCATCACGCCCCAGGACATTGCCCTTTTTACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTGCCGTTGTTGCATTCCTTCGACATCATCGGTGAAGGCTTCGACAACCCGGCCATGCGCAAGCTGATCGACGA
GGTGAAACAGGACGTGGCGGCAGGCAACAGCTTCGCCACGGCCCTGCGCAAGAAGCCGCAATACTTCGATGAGTTGTACT
GCAACCTGGTGGACGCCGGGGAACAGGCCGGCGCGCTGGACACCCTGCTGGAACGGGTGGCGACCTACAAGGAAAAAAGC
GAAAGCCTCAAGGCGAAGATCAAGAAAGCCATGACCTACCCGCTGATCGTCGTGTGCGTGGCGATCATCGTGACCGCTAT
CCTGCTGATCAAGGTGGTGCCGCAGTTCGAGTCGGTATTCAAGGGTTTTGGCGCTGAACTGCCGGCCTTCACCCTGATGG
TCATCGACCTGTCGCAATGGCTGCAGGCGTGGTGGTGGATGCTGCTGGGCGCGCTCAGCGCGGGCGTTTTCGCTGCGCGC
CACGCGCTGAAAACCTCCCAGGGTTTTCGCGACCGCATGGATACCTGGCTGCTGAAACTGCCGCTGGCAGGTACCTTGAT
GTACAAGTCCGCCGTGGCCCGGTTCGCCCGCACGCTGTCGACCACCTTCGCTGCCGGTGTGCCACTGGTGGAAGCCCTGG
AGTCTGTGGCCGGCGCCACTGGCAACATCGTGTTCAAACGCGCGGTGCTGCGCATCCGGCAGGACGTTGCGACGGGCATG
CAGCTAAATTTCTCCATGCGTACGACCGGTATTTTTCCCAATATGGCCATTTCGATGACCGCCATTGGCGAGGAGTCTGG
CGCACTCGACGACATGCTCGACAAGGTCGCCGGTTTCTACGAGGACGAGGTCGACAATCTGGTCGACAATCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATTGTCGGCGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.346

100

0.723
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Acinetobacter baylyi ADP1

57.389

100

0.575
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilG Neisseria gonorrhoeae MS11

43.939

97.778

0.43
  pilG Neisseria meningitidis 44/76-A

43.687

97.778

0.427
  pilC Vibrio cholerae strain A1552

43.358

98.519

0.427
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

40.1

98.519

0.395