Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HCW_RS00180 Genome accession   NC_017737
Coordinates   34225..34968 (-) Length   247 a.a.
NCBI ID   WP_014660211.1    Uniprot ID   -
Organism   Helicobacter cetorum MIT 00-7128     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29225..39968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCW_RS09520 (HCW_00160) gmd 29583..30728 (-) 1146 WP_014660207.1 GDP-mannose 4,6-dehydratase -
  HCW_RS09525 (HCW_00165) - 30738..32147 (-) 1410 WP_014660208.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HCW_RS00170 (HCW_00170) comB10 32187..33320 (-) 1134 WP_014660209.1 DNA type IV secretion system protein ComB10 Machinery gene
  HCW_RS00175 (HCW_00175) comB9 33317..34225 (-) 909 WP_014660210.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HCW_RS00180 (HCW_00180) comB8 34225..34968 (-) 744 WP_014660211.1 type IV secretion system protein Machinery gene
  HCW_RS09530 (HCW_00185) comB7 34965..35081 (-) 117 WP_014660212.1 hypothetical protein Machinery gene
  HCW_RS00185 (HCW_00190) comB6 35104..36153 (-) 1050 WP_014660213.1 NADH-ubiquinone oxidoreductase Machinery gene
  HCW_RS00190 (HCW_00195) - 36165..37157 (-) 993 WP_043902703.1 DUF7488 domain-containing protein -
  HCW_RS00195 (HCW_00200) - 37157..37450 (-) 294 WP_043902704.1 YbaB/EbfC family nucleoid-associated protein -
  HCW_RS00200 (HCW_00205) panD 37461..37814 (-) 354 WP_014660216.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28847.21 Da        Isoelectric Point: 9.0658

>NTDB_id=50462 HCW_RS00180 WP_014660211.1 34225..34968(-) (comB8) [Helicobacter cetorum MIT 00-7128]
MKEKPFNSEQLAYLEEILNSQEKHLESKLSSFCVNDLDIQSVFRLERNRLKIAYRLLGLMSVIALILAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISHNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSAKVWQRFEDLIKTKNSIY
AQSHLEREVHIINIAIYHQDNNPIASVSIVAKLMNENKLVYEKRFKIVLSYMFDTPDFDYTSMPKNPTGFKITRYSITEI
TPTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=50462 HCW_RS00180 WP_014660211.1 34225..34968(-) (comB8) [Helicobacter cetorum MIT 00-7128]
ATGAAAGAAAAGCCTTTTAATAGCGAGCAATTAGCCTATTTAGAAGAGATTTTAAACTCTCAAGAAAAGCATTTAGAAAG
CAAACTTTCTAGTTTTTGTGTGAATGATTTAGACATACAGAGCGTGTTTAGGCTAGAGAGAAATCGCCTAAAAATCGCTT
ACAGACTCTTAGGTTTAATGAGTGTTATCGCTCTTATTTTAGCTATTGTATTAATTAGCCTTTTACCCTTACAAAAAACC
GAACACCATTTTGTGGACTTTTTAAATCAAGACAAGCACTACGCTATTATTCAAAGAGCGGATAAAAGCATTTCACATAA
TGAAGCCTTAGCTCGCTCTCTTATAGGGGCGTATGTGCTAAATAGAGAGAGCATTAATCGTATTGATGATAAGTCTCGCT
ATGAATTAGTGCGATTACAAAGTAGTGCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACAAAAAACAGCATTTAC
GCACAGAGCCATTTAGAAAGGGAAGTCCATATTATAAACATTGCGATTTATCATCAAGATAATAACCCCATTGCTAGCGT
GTCTATTGTGGCAAAACTGATGAATGAAAATAAGCTCGTGTATGAAAAGCGTTTTAAAATCGTGCTAAGTTATATGTTTG
ACACCCCTGATTTTGATTACACTTCTATGCCTAAAAACCCTACCGGTTTTAAAATCACTCGTTATAGCATTACAGAAATC
ACGCCTACAAACAGGAATGATTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(39-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

89.879

100

0.899

Multiple sequence alignment