Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HCW_RS00280 | Genome accession | NC_017737 |
| Coordinates | 58413..58673 (-) | Length | 86 a.a. |
| NCBI ID | WP_014660230.1 | Uniprot ID | I0EK85 |
| Organism | Helicobacter cetorum MIT 00-7128 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53413..63673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCW_RS00265 (HCW_00275) | thiE | 53521..54159 (+) | 639 | WP_014660228.1 | thiamine phosphate synthase | - |
| HCW_RS00270 (HCW_00280) | - | 54173..55585 (-) | 1413 | WP_014660229.1 | COG3014 family protein | - |
| HCW_RS00275 | - | 56019..58407 (-) | 2389 | Protein_54 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HCW_RS00280 (HCW_00295) | comB3 | 58413..58673 (-) | 261 | WP_014660230.1 | hypothetical protein | Machinery gene |
| HCW_RS00285 (HCW_00300) | comB2 | 58674..58955 (-) | 282 | WP_014660231.1 | TrbC/VirB2 family protein | Machinery gene |
| HCW_RS00290 (HCW_00305) | - | 59218..60048 (-) | 831 | WP_014660232.1 | DUF5718 family protein | - |
| HCW_RS00295 (HCW_00310) | - | 60170..61222 (-) | 1053 | WP_014660233.1 | MnmA/TRMU family protein | - |
| HCW_RS00300 (HCW_00315) | dnaG | 61219..62937 (-) | 1719 | WP_014660234.1 | DNA primase | - |
| HCW_RS00305 (HCW_00320) | groES | 63210..63557 (+) | 348 | WP_014660235.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10028.13 Da Isoelectric Point: 9.5741
>NTDB_id=50464 HCW_RS00280 WP_014660230.1 58413..58673(-) (comB3) [Helicobacter cetorum MIT 00-7128]
MVVAISVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLNAFLLYLGFLILFSVLEFFDEDIADIIVARGKIRTK
TKCYRA
MVVAISVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLNAFLLYLGFLILFSVLEFFDEDIADIIVARGKIRTK
TKCYRA
Nucleotide
Download Length: 261 bp
>NTDB_id=50464 HCW_RS00280 WP_014660230.1 58413..58673(-) (comB3) [Helicobacter cetorum MIT 00-7128]
GTGGTCGTAGCAATAAGTGTCAAAAATTTGCGTGAAATTTCTGTTAAAGAAAAGTTTTTGTGGCTGAATGCAAAGTCTTA
TCTCATTTCTATTTTTGTGCCTTTTATATTGCTCCCTTGGATTGACTTGCTGAACGCCTTTTTGTTGTATTTAGGGTTTT
TAATACTCTTTAGTGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTGTAGCTAGGGGAAAGATTAGGACTAAA
ACTAAGTGTTATAGGGCTTAA
GTGGTCGTAGCAATAAGTGTCAAAAATTTGCGTGAAATTTCTGTTAAAGAAAAGTTTTTGTGGCTGAATGCAAAGTCTTA
TCTCATTTCTATTTTTGTGCCTTTTATATTGCTCCCTTGGATTGACTTGCTGAACGCCTTTTTGTTGTATTTAGGGTTTT
TAATACTCTTTAGTGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTGTAGCTAGGGGAAAGATTAGGACTAAA
ACTAAGTGTTATAGGGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
86.047 |
100 |
0.86 |