Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HCW_RS00185 | Genome accession | NC_017737 |
| Coordinates | 35104..36153 (-) | Length | 349 a.a. |
| NCBI ID | WP_014660213.1 | Uniprot ID | I0EK68 |
| Organism | Helicobacter cetorum MIT 00-7128 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30104..41153
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCW_RS09525 (HCW_00165) | - | 30738..32147 (-) | 1410 | WP_014660208.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HCW_RS00170 (HCW_00170) | comB10 | 32187..33320 (-) | 1134 | WP_014660209.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HCW_RS00175 (HCW_00175) | comB9 | 33317..34225 (-) | 909 | WP_014660210.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HCW_RS00180 (HCW_00180) | comB8 | 34225..34968 (-) | 744 | WP_014660211.1 | type IV secretion system protein | Machinery gene |
| HCW_RS09530 (HCW_00185) | comB7 | 34965..35081 (-) | 117 | WP_014660212.1 | hypothetical protein | Machinery gene |
| HCW_RS00185 (HCW_00190) | comB6 | 35104..36153 (-) | 1050 | WP_014660213.1 | NADH-ubiquinone oxidoreductase | Machinery gene |
| HCW_RS00190 (HCW_00195) | - | 36165..37157 (-) | 993 | WP_043902703.1 | DUF7488 domain-containing protein | - |
| HCW_RS00195 (HCW_00200) | - | 37157..37450 (-) | 294 | WP_043902704.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HCW_RS00200 (HCW_00205) | panD | 37461..37814 (-) | 354 | WP_014660216.1 | aspartate 1-decarboxylase | - |
| HCW_RS00205 (HCW_00210) | - | 37811..40015 (-) | 2205 | WP_014660217.1 | AAA family ATPase | - |
| HCW_RS00210 (HCW_00215) | - | 40015..40275 (-) | 261 | WP_418904588.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HCW_RS00215 (HCW_00220) | - | 40378..40791 (-) | 414 | WP_014660219.1 | universal stress protein | - |
Sequence
Protein
Download Length: 349 a.a. Molecular weight: 40198.52 Da Isoelectric Point: 7.7449
>NTDB_id=50463 HCW_RS00185 WP_014660213.1 35104..36153(-) (comB6) [Helicobacter cetorum MIT 00-7128]
MQPNAYEVVLSWFITPLTAILGQFADFFLYSLHAQLVFNSLVSLAFMVFAYERLKEQNLFSKQTILETLFFVGFFALFNY
ALNHIDTFYILFKKIIFALPDLLTNSLAQSLENQMQDTLVLRLDFLFNYAFSALTFIWDLAHKEWSLWLILGILQALFLS
VMFALIILVWLEVHVWCSLGVLFLAFGFFKAWRGVLWICFKKCLALGFYKPLILLVGFLNAYIMQVLMNAQMHAREDLAL
LLLVALFCCLGLIISVPFFINAFFKTHNSIRESVQLITTLSTNLSQAVSSSFNQVLMQSTHSQNSQNTSKERESSTHSPT
FRVETTTIMPKIVDFKQKKVKKDTIEPEV
MQPNAYEVVLSWFITPLTAILGQFADFFLYSLHAQLVFNSLVSLAFMVFAYERLKEQNLFSKQTILETLFFVGFFALFNY
ALNHIDTFYILFKKIIFALPDLLTNSLAQSLENQMQDTLVLRLDFLFNYAFSALTFIWDLAHKEWSLWLILGILQALFLS
VMFALIILVWLEVHVWCSLGVLFLAFGFFKAWRGVLWICFKKCLALGFYKPLILLVGFLNAYIMQVLMNAQMHAREDLAL
LLLVALFCCLGLIISVPFFINAFFKTHNSIRESVQLITTLSTNLSQAVSSSFNQVLMQSTHSQNSQNTSKERESSTHSPT
FRVETTTIMPKIVDFKQKKVKKDTIEPEV
Nucleotide
Download Length: 1050 bp
>NTDB_id=50463 HCW_RS00185 WP_014660213.1 35104..36153(-) (comB6) [Helicobacter cetorum MIT 00-7128]
ATGCAACCAAATGCCTATGAAGTGGTTCTTTCTTGGTTTATCACACCACTTACAGCGATTTTGGGACAATTTGCAGATTT
TTTCTTATATAGTTTGCATGCGCAATTAGTTTTTAATTCTCTTGTATCTTTAGCGTTTATGGTATTTGCTTATGAGCGCT
TGAAAGAGCAGAATTTGTTTAGCAAACAAACCATCTTAGAGACATTGTTTTTTGTAGGGTTTTTTGCCTTATTTAATTAT
GCGCTTAATCATATAGATACTTTTTATATATTGTTTAAAAAGATAATTTTTGCTTTGCCGGATTTATTAACTAACTCATT
GGCTCAAAGCTTAGAAAATCAAATGCAAGACACGCTTGTATTGCGTTTGGATTTTTTATTCAACTATGCTTTTTCTGCGC
TTACTTTTATATGGGATTTAGCTCATAAAGAATGGTCATTATGGCTTATTTTGGGTATTTTGCAAGCTCTTTTTTTAAGC
GTGATGTTTGCTTTAATTATATTGGTGTGGCTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTATTTTTAGCCTTTGG
GTTTTTTAAAGCATGGCGTGGTGTGCTATGGATATGTTTTAAAAAATGTCTAGCGTTAGGATTTTATAAACCTTTAATTC
TTTTAGTAGGTTTTTTAAACGCTTATATTATGCAAGTTTTAATGAATGCTCAAATGCATGCAAGAGAGGATTTAGCGCTT
TTATTATTGGTGGCACTCTTTTGTTGTTTGGGTTTAATTATAAGTGTGCCCTTTTTTATCAATGCGTTTTTTAAAACCCA
TAATAGTATTAGAGAGAGCGTTCAATTGATTACTACTTTAAGCACCAATCTTAGCCAAGCTGTTTCAAGCTCTTTTAATC
AAGTTTTAATGCAATCTACACATAGCCAAAATTCTCAAAATACCTCTAAAGAAAGAGAGAGTTCTACGCATTCTCCCACT
TTTAGGGTAGAAACGACCACTATAATGCCAAAAATTGTAGATTTCAAGCAAAAGAAAGTTAAAAAGGATACAATAGAGCC
AGAAGTTTAA
ATGCAACCAAATGCCTATGAAGTGGTTCTTTCTTGGTTTATCACACCACTTACAGCGATTTTGGGACAATTTGCAGATTT
TTTCTTATATAGTTTGCATGCGCAATTAGTTTTTAATTCTCTTGTATCTTTAGCGTTTATGGTATTTGCTTATGAGCGCT
TGAAAGAGCAGAATTTGTTTAGCAAACAAACCATCTTAGAGACATTGTTTTTTGTAGGGTTTTTTGCCTTATTTAATTAT
GCGCTTAATCATATAGATACTTTTTATATATTGTTTAAAAAGATAATTTTTGCTTTGCCGGATTTATTAACTAACTCATT
GGCTCAAAGCTTAGAAAATCAAATGCAAGACACGCTTGTATTGCGTTTGGATTTTTTATTCAACTATGCTTTTTCTGCGC
TTACTTTTATATGGGATTTAGCTCATAAAGAATGGTCATTATGGCTTATTTTGGGTATTTTGCAAGCTCTTTTTTTAAGC
GTGATGTTTGCTTTAATTATATTGGTGTGGCTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTATTTTTAGCCTTTGG
GTTTTTTAAAGCATGGCGTGGTGTGCTATGGATATGTTTTAAAAAATGTCTAGCGTTAGGATTTTATAAACCTTTAATTC
TTTTAGTAGGTTTTTTAAACGCTTATATTATGCAAGTTTTAATGAATGCTCAAATGCATGCAAGAGAGGATTTAGCGCTT
TTATTATTGGTGGCACTCTTTTGTTGTTTGGGTTTAATTATAAGTGTGCCCTTTTTTATCAATGCGTTTTTTAAAACCCA
TAATAGTATTAGAGAGAGCGTTCAATTGATTACTACTTTAAGCACCAATCTTAGCCAAGCTGTTTCAAGCTCTTTTAATC
AAGTTTTAATGCAATCTACACATAGCCAAAATTCTCAAAATACCTCTAAAGAAAGAGAGAGTTCTACGCATTCTCCCACT
TTTAGGGTAGAAACGACCACTATAATGCCAAAAATTGTAGATTTCAAGCAAAAGAAAGTTAAAAAGGATACAATAGAGCC
AGAAGTTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
59.429 |
100 |
0.596 |