Detailed information NTG0050461

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SCRE_RS09650
• Genome accession: NC_022236
• Coordinates: 1919278..1920375 (+)
• Length: 365 a.a.
• NCBI ID: WP_020998128.1
• Uniprot ID: -
• Organism: Streptococcus constellatus subsp. pharyngis C232
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1914278..1925375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCRE_RS09625 (SCRE_1878)	pgsA	1914748..1915287 (-)	540	WP_006270330.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SCRE_RS09630 (SCRE_1879)	rodZ	1915298..1916119 (-)	822	WP_020998125.1	cytoskeleton protein RodZ	-
SCRE_RS09635 (SCRE_1880)	yfmH	1916178..1917473 (-)	1296	WP_006268797.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SCRE_RS09640 (SCRE_1881)	yfmF	1917473..1918720 (-)	1248	WP_020998126.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SCRE_RS09645 (SCRE_1882)	yaaA	1918895..1919275 (+)	381	WP_020998127.1	S4 domain-containing protein YaaA	-
SCRE_RS09650 (SCRE_1883)	recF	1919278..1920375 (+)	1098	WP_020998128.1	DNA replication/repair protein RecF	Machinery gene
SCRE_RS09655 (SCRE_1884)	guaB	1920460..1921941 (-)	1482	WP_003071643.1	IMP dehydrogenase	-
SCRE_RS09660 (SCRE_1885)	trpS	1922079..1923104 (-)	1026	WP_006268883.1	tryptophan--tRNA ligase	-
SCRE_RS09665 (SCRE_1886)	galE	1923186..1924181 (-)	996	WP_020998129.1	UDP-glucose 4-epimerase GalE	-
SCRE_RS09670 (SCRE_1887)	-	1924201..1924890 (-)	690	WP_006268827.1	triose-phosphate isomerase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42277.89 Da
• Isoelectric Point: 9.4521

>NTDB_id=50461 SCRE_RS09650 WP_020998128.1 1919278..1920375(+) (recF) [Streptococcus constellatus subsp. pharyngis C232]
MWLKNLQIQHFRNYELIEIDFHPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSKDTLKVSGQLVKQTGK
ISLEIDLTPKGRITKVNHLKQSKLSDYIGNMNIVLFAPEDLQLIKGAPALRRKFVDIELGQIKPIYLSDLSHYHHVLKQR
NTYLKTAKTIDETFLTVLDDQLVEFGCRIMQHRIEFLKKLEYFGQQKHLELSNNLENLTIKYCSSIRLSDFNKLEEAFRI
ALKQSRSRDLFKKTTGIGPHRDDIAFYINDMNANFGSQGQHRSVVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLESISQNIQTFITTTTLEHLQSMPSDIKIFSIHEGKLTKKNM

Nucleotide

• Length: 1098 bp

>NTDB_id=50461 SCRE_RS09650 WP_020998128.1 1919278..1920375(+) (recF) [Streptococcus constellatus subsp. pharyngis C232]
ATGTGGTTAAAAAACTTACAAATTCAACATTTTCGCAATTACGAGCTAATTGAAATAGACTTTCATCCTGGACTCAACAT
TTTTCTAGGTCAAAATGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCATTGACACGGAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAAAGACACCTTAAAAGTATCTGGACAACTTGTCAAGCAAACTGGAAAG
ATTTCTTTAGAGATTGACTTGACACCAAAAGGAAGAATTACAAAGGTTAATCATCTAAAACAAAGCAAATTATCAGATTA
CATTGGAAATATGAATATTGTTTTGTTTGCTCCAGAAGATTTACAATTGATTAAAGGAGCTCCAGCCCTTAGACGCAAAT
TTGTTGATATAGAGTTGGGGCAAATTAAACCAATTTATTTATCTGATTTATCACATTATCATCATGTTCTAAAACAGAGA
AATACTTATTTAAAGACAGCAAAAACAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGTTAGTAGAGTTTGGTTG
CCGCATTATGCAGCATCGAATAGAATTTCTCAAAAAATTAGAATACTTTGGTCAGCAAAAACATTTGGAACTCTCAAATA
ATTTAGAAAATTTAACTATTAAATACTGCTCTTCTATTCGACTTTCAGATTTCAATAAACTAGAAGAAGCTTTTCGAATT
GCATTAAAACAAAGTCGTAGCAGAGATTTATTTAAAAAAACTACTGGAATTGGTCCCCATCGAGATGATATTGCTTTTTA
TATCAATGATATGAATGCTAATTTTGGTAGTCAAGGACAACATCGAAGCGTAGTCTTATCTCTCAAACTGGCAGAAATTG
AGCTTATGGAAACTGTTACTAAAGAAAAACCAATTCTTCTACTTGACGATGTCATGAGTGAACTTGACAATAACCGTCAA
CTTAATCTACTTGAATCTATTTCCCAAAACATCCAAACATTTATCACCACAACAACTCTAGAACATTTACAAAGCATGCC
TTCTGATATTAAAATTTTCTCAATTCACGAAGGAAAATTAACAAAAAAAAACATGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	98.904	0.693
recF	Bacillus subtilis subsp. subtilis str. 168	44.324	100	0.449