Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MSA_RS04425 Genome accession   NC_021486
Coordinates   788441..789037 (+) Length   198 a.a.
NCBI ID   WP_016480636.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783441..794037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS04410 (MSA_9070) tpiA 784625..785383 (+) 759 WP_000087883.1 triose-phosphate isomerase -
  MSA_RS04415 (MSA_9080) - 785560..786252 (+) 693 WP_000240135.1 phosphoglycerate mutase -
  MSA_RS04420 (MSA_9090) pbp2b 786381..788426 (+) 2046 WP_041165673.1 penicillin-binding protein PBP2B -
  MSA_RS04425 (MSA_9100) recR 788441..789037 (+) 597 WP_016480636.1 recombination mediator RecR Machinery gene
  MSA_RS04430 (MSA_9110) - 789178..790224 (+) 1047 WP_016480637.1 D-alanine--D-alanine ligase -
  MSA_RS04435 (MSA_9120) murF 790372..791739 (+) 1368 WP_016480638.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  MSA_RS04440 (MSA_9130) - 791926..793146 (+) 1221 WP_016480639.1 OFA family MFS transporter -
  MSA_RS04445 (MSA_9140) - 793275..793961 (+) 687 WP_000569011.1 YwaF family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21667.90 Da        Isoelectric Point: 4.6452

>NTDB_id=49077 MSA_RS04425 WP_016480636.1 788441..789037(+) (recR) [Streptococcus agalactiae ILRI005]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEYVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQS
VILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=49077 MSA_RS04425 WP_016480636.1 788441..789037(+) (recR) [Streptococcus agalactiae ILRI005]
ATGCTTTACCCAACACCAATTGCTAAATTGATTGACAGCTTTTCAAAATTACCGGGTATAGGTACTAAAACAGCAACACG
TTTAGCTTTTTACACTATTGGTATGAGTGATGAATATGTTAATGAATTTGCTAAGAATTTATTAGCTGCTAAGCGGGAAT
TAACCTATTGTTCTGTTTGTGGTAATTTGACTGATGATGATCCTTGCTTAATTTGTACAGATAAGACGCGTGACCAGTCT
GTTATCTTGGTTGTTGAAGATAGCAAAGATGTGTCAGCTATGGAAAAAATTCAAGAGTATAATGGTTTGTATCATGTCTT
ACATGGCTTAATTTCACCTATGAATGGTATTAGCCCTGATGACATTAATTTGAAAAGTTTAATTACTCGATTGATGGATG
GTCAGGTGACAGAAGTTATTGTTGCTACCAATGCGACTGCTGATGGTGAAGCTACATCAATGTATATTTCACGAGTCTTA
AAACCAGCTGGTATCAAAGTGACACGATTAGCGAGAGGTTTAGCTGTTGGTTCAGATATCGAATATGCAGATGAAGTAAC
CTTGCTTCGAGCAATCGAAAATCGTACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment