Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | SESEC_RS09060 | Genome accession | NC_017582 |
| Coordinates | 1912280..1912606 (-) | Length | 108 a.a. |
| NCBI ID | WP_014623503.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus ATCC 35246 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1907280..1917606
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SESEC_RS09045 (SeseC_02305) | - | 1908637..1909275 (-) | 639 | WP_038673957.1 | LPXTG cell wall anchor domain-containing protein | - |
| SESEC_RS09050 (SeseC_02306) | - | 1909290..1909589 (-) | 300 | WP_038673954.1 | hypothetical protein | - |
| SESEC_RS09055 (SeseC_02309) | - | 1909957..1912242 (-) | 2286 | WP_038673952.1 | C39 family peptidase | - |
| SESEC_RS09060 (SeseC_02310) | ssbB | 1912280..1912606 (-) | 327 | WP_014623503.1 | single-stranded DNA-binding protein | Machinery gene |
| SESEC_RS09065 (SeseC_02311) | - | 1912603..1913691 (-) | 1089 | WP_014623504.1 | replication initiator protein A | - |
| SESEC_RS09070 (SeseC_02312) | - | 1913692..1913877 (-) | 186 | WP_014623505.1 | hypothetical protein | - |
| SESEC_RS09075 (SeseC_02314) | - | 1913943..1914233 (-) | 291 | WP_014623506.1 | hypothetical protein | - |
| SESEC_RS09080 (SeseC_02315) | - | 1914762..1915127 (-) | 366 | WP_012677371.1 | hypothetical protein | - |
| SESEC_RS09085 (SeseC_02318) | - | 1915717..1916598 (-) | 882 | WP_014623510.1 | class II fructose-bisphosphate aldolase | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12254.07 Da Isoelectric Point: 10.0095
>NTDB_id=49077 SESEC_RS09060 WP_014623503.1 1912280..1912606(-) (ssbB) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MNNINLVGRLTKKAELYQTPDKKIYARFTLAINRKKKAGGSGNEADFIPCIIWGKAAENLVSWTDKGTLISLEGELRTRS
YDKDGQKHFVMEVWSTFFQVLSKPVTDN
MNNINLVGRLTKKAELYQTPDKKIYARFTLAINRKKKAGGSGNEADFIPCIIWGKAAENLVSWTDKGTLISLEGELRTRS
YDKDGQKHFVMEVWSTFFQVLSKPVTDN
Nucleotide
Download Length: 327 bp
>NTDB_id=49077 SESEC_RS09060 WP_014623503.1 1912280..1912606(-) (ssbB) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGAATAACATAAACCTAGTCGGTCGGCTAACTAAAAAAGCTGAACTCTATCAAACACCTGATAAGAAAATCTATGCTCG
CTTTACCCTAGCGATTAACCGCAAAAAGAAGGCAGGTGGTTCAGGAAACGAGGCTGACTTCATTCCCTGCATCATCTGGG
GGAAAGCAGCTGAAAACCTTGTCAGCTGGACCGACAAAGGAACGCTGATCAGTCTCGAGGGCGAGCTACGAACAAGGAGC
TATGACAAAGATGGTCAAAAGCATTTTGTCATGGAGGTTTGGTCAACCTTTTTCCAAGTCTTATCAAAGCCAGTTACTGA
CAATTAA
ATGAATAACATAAACCTAGTCGGTCGGCTAACTAAAAAAGCTGAACTCTATCAAACACCTGATAAGAAAATCTATGCTCG
CTTTACCCTAGCGATTAACCGCAAAAAGAAGGCAGGTGGTTCAGGAAACGAGGCTGACTTCATTCCCTGCATCATCTGGG
GGAAAGCAGCTGAAAACCTTGTCAGCTGGACCGACAAAGGAACGCTGATCAGTCTCGAGGGCGAGCTACGAACAAGGAGC
TATGACAAAGATGGTCAAAAGCATTTTGTCATGGAGGTTTGGTCAACCTTTTTCCAAGTCTTATCAAAGCCAGTTACTGA
CAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
48.598 |
99.074 |
0.481 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48 |
92.593 |
0.444 |
| ssbA | Streptococcus mutans UA159 |
48 |
92.593 |
0.444 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
48 |
92.593 |
0.444 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
48 |
92.593 |
0.444 |
| ssbB/cilA | Streptococcus mitis SK321 |
48 |
92.593 |
0.444 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
47 |
92.593 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
47 |
92.593 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
47 |
92.593 |
0.435 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.118 |
94.444 |
0.417 |
| ssb | Staphylococcus aureus N315 |
38.889 |
100 |
0.389 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
39.252 |
99.074 |
0.389 |
| ssb | Staphylococcus aureus MW2 |
37.963 |
100 |
0.38 |