Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SGGB_RS02040 Genome accession   NC_017576
Coordinates   371377..371862 (+) Length   161 a.a.
NCBI ID   WP_043910942.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 366377..376862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS02040 (SGGB_0357) comX/sigX 371377..371862 (+) 486 WP_043910942.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGGB_RS02045 (SGGB_0358) - 371974..373596 (-) 1623 WP_009853408.1 glycoside hydrolase family 5 protein -
  SGGB_RS02050 (SGGB_0359) - 374045..375406 (-) 1362 WP_009853409.1 aspartate kinase -
  SGGB_RS02055 (SGGB_0360) - 375500..376147 (+) 648 WP_009853410.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19336.26 Da        Isoelectric Point: 8.6918

>NTDB_id=48900 SGGB_RS02040 WP_043910942.1 371377..371862(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLKEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=48900 SGGB_RS02040 WP_043910942.1 371377..371862(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGAAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.