Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IC628_RS04315 Genome accession   NZ_CP061861
Coordinates   874764..875024 (+) Length   86 a.a.
NCBI ID   WP_371332594.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. piscicida strain AS-16-0555-7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 875117..875392 874764..875024 flank 93


Gene organization within MGE regions


Location: 874764..875392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC628_RS04315 (IC628_04315) comEA 874764..875024 (+) 261 WP_371332594.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 9471.94 Da        Isoelectric Point: 5.1351

>NTDB_id=485339 IC628_RS04315 WP_371332594.1 874764..875024(+) (comEA) [Photobacterium damselae subsp. piscicida strain AS-16-0555-7]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGVGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL

Nucleotide


Download         Length: 261 bp        

>NTDB_id=485339 IC628_RS04315 WP_371332594.1 874764..875024(+) (comEA) [Photobacterium damselae subsp. piscicida strain AS-16-0555-7]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAATACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAGTTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(24-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

52.326

100

0.523
  comEA Vibrio parahaemolyticus RIMD 2210633

52.941

98.837

0.523
  comEA Acinetobacter baylyi ADP1

59.375

74.419

0.442
  comEA Vibrio cholerae C6706

55.882

79.07

0.442
  comEA Vibrio cholerae strain A1552

55.882

79.07

0.442
  comE1/comEA Haemophilus influenzae Rd KW20

55

69.767

0.384
  comEA/comE1 Glaesserella parasuis strain SC1401

54.098

70.93

0.384
  comEA Bacillus subtilis subsp. subtilis str. 168

50.794

73.256

0.372
  comE Neisseria gonorrhoeae MS11

54.237

68.605

0.372
  comE Neisseria gonorrhoeae MS11

54.237

68.605

0.372
  comE Neisseria gonorrhoeae MS11

54.237

68.605

0.372
  comE Neisseria gonorrhoeae MS11

54.237

68.605

0.372
  comA Synechocystis sp. PCC 6803

42.105

88.372

0.372
  comEA Lactococcus lactis subsp. cremoris KW2

50

72.093

0.36