Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IC781_RS16795 Genome accession   NZ_CP061626
Coordinates   3545989..3546462 (-) Length   157 a.a.
NCBI ID   WP_191010545.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540989..3551462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16780 (IC781_16780) pilX 3543625..3544440 (-) 816 WP_191010543.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC781_RS16785 (IC781_16785) pilW 3544437..3545435 (-) 999 WP_191010544.1 PilW family protein Machinery gene
  IC781_RS16790 (IC781_16790) pilV 3545435..3545995 (-) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC781_RS16795 (IC781_16795) fimU 3545989..3546462 (-) 474 WP_191010545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC781_RS16800 (IC781_16800) ispH 3546629..3547579 (-) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC781_RS16805 (IC781_16805) gmk 3547702..3548331 (+) 630 WP_191001035.1 guanylate kinase -
  IC781_RS16810 (IC781_16810) rpoZ 3548404..3548682 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC781_RS16815 (IC781_16815) - 3548721..3548851 (+) 131 Protein_3303 hypothetical protein -
  IC781_RS16820 (IC781_16820) - 3548891..3550997 (+) 2107 Protein_3304 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.52 Da        Isoelectric Point: 9.3090

>NTDB_id=483662 IC781_RS16795 WP_191010545.1 3545989..3546462(-) (fimU) [Acinetobacter seifertii strain AS48]
MRGIIPQEGFTLIELMVTIAVMAIITMIAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
SLNWQPTSNNTLTLKNIAADLTQSSFTTTTLTFNANGVVSNITQDALISICNSKINKKKNFILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=483662 IC781_RS16795 WP_191010545.1 3545989..3546462(-) (fimU) [Acinetobacter seifertii strain AS48]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCCTAATTGAGCTCATGGTAACAATTGCAGTCATGGCAATTATTACAAT
GATAGCAGCACCATCTATGTCGAATTTATTAGAAAGTAAACGTTTAGATACAAATCAAAGAGATTTAATTAGCACCCTAT
CTGAGGCAAAAAGTCAGGCTGTGCTTGGACGTCAGAACGTTTCAGTCAATTTAAATTCAGCAGCGTCTAATACGGCAACT
TCATTAAATTGGCAACCAACTTCGAATAATACTCTAACGCTAAAAAATATAGCTGCTGATCTTACACAAAGTTCTTTCAC
TACCACTACTTTAACATTTAATGCAAATGGGGTAGTGAGTAATATTACTCAAGATGCGCTTATATCTATATGTAACTCAA
AAATAAATAAAAAGAAAAATTTCATACTTACAAAACTTGGAACTTTAGTTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

86.624

100

0.866