Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC781_RS16895 Genome accession   NZ_CP061626
Coordinates   3567780..3569933 (-) Length   717 a.a.
NCBI ID   WP_191010557.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3562780..3574933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16880 (IC781_16880) - 3565198..3566072 (-) 875 Protein_3316 hypothetical protein -
  IC781_RS16885 (IC781_16885) aroB 3566088..3567170 (-) 1083 WP_191010555.1 3-dehydroquinate synthase -
  IC781_RS16890 (IC781_16890) aroK 3567199..3567768 (-) 570 WP_191010556.1 shikimate kinase AroK -
  IC781_RS16895 (IC781_16895) pilQ 3567780..3569933 (-) 2154 WP_191010557.1 type IV pilus secretin PilQ family protein Machinery gene
  IC781_RS16900 (IC781_16900) pilP 3569996..3570523 (-) 528 WP_191011550.1 pilus assembly protein PilP Machinery gene
  IC781_RS16905 (IC781_16905) pilO 3570534..3571274 (-) 741 WP_191010558.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC781_RS16910 (IC781_16910) pilN 3571271..3571915 (-) 645 WP_191010559.1 PilN domain-containing protein Machinery gene
  IC781_RS16915 (IC781_16915) pilM 3571915..3572973 (-) 1059 WP_191010560.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 77234.48 Da        Isoelectric Point: 6.9035

>NTDB_id=483664 IC781_RS16895 WP_191010557.1 3567780..3569933(-) (pilQ) [Acinetobacter seifertii strain AS48]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKHSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRMEGNTFILKINSAQTANKPIPVAAAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDSYNDKGVGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNLTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVKVKQVMVEARIVRASTSFTKELGVKWGIL
SQGVNSNNSLLVGGSETTLWNLKNPDSNGKYTIERPDNLNVDLGVTSAGASSIAFSLISMSDFMLDLELSALQADGYGEV
ISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTASTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPNGELI
LNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=483664 IC781_RS16895 WP_191010557.1 3567780..3569933(-) (pilQ) [Acinetobacter seifertii strain AS48]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCAATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATATTAGATTTTGATAAGGCACAGCAAAGTTTAAAACACTCTAAAATT
GCAGTTGCAACCAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGACCAGCGTTCTCGTTTAACAGTAAATCTAAAAGA
TGCTGGTGCTTTTACGACGCGCATGGAGGGTAATACTTTTATCCTAAAAATTAATTCAGCTCAAACAGCGAATAAGCCGA
TACCAGTAGCTGCCGCACAACCACAAGGTGTGTCAAATATTGGTTTTCAACGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACGCCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACATTGGGTACAAA
AATTCCGACACATTTAGCACGTCGATTAAATGTAAATGATTTTGCAACGCCAGTTTCAAGTATAGATTCTTATAATGACA
AAGGTGTTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCGTATCAGGCCGAAAATAAGTTAACTATT
AGCCTTAAACGCCCTCAAGATAAAAATTTAACGTCTTTATACAAAACACCAAATTATTCTGGAAATAAGCTTTCTTTAGA
TTTTCAAGATATTGAAGTGCGTCGTGTTTTACAGCTTCTTGCTGATTTTACAGGCATCAATATGGTAGCTGCTGATAGTG
TGCAAGGTAACATCACCCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGCCGTAATGGAAATGTAATTTGGATTGCTCCAGTTGCAGAACTAATTAAGGCAGAAGAGGAGGAGGCGAAGGC
TGTTGCACAAAGTGTCAAACTTGCTCCATTACAAACCGAATATATCCAGCTTAAATATGCTAAAGCTGGCGATATTATGG
GTTTGATTACTCAAGGTTCAAATAATAGTAATGGTTTACAGCATACGTCGGGTGGAGGTACATCAACCTCAACTAATTTA
AATACTGGAGTTGATAGTCTGGGTAATAATGTGGGAAGTTTACTTAGTCCACGTGGTACGATTACTCAAGATGACCGTAC
TAATACCTTAATTATTAACGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATTTGCTTGATGTAAAAGTTA
AGCAGGTTATGGTTGAAGCACGTATTGTGAGAGCCTCTACTTCATTTACCAAAGAACTTGGCGTTAAGTGGGGAATATTA
TCGCAAGGGGTGAACAGTAATAACAGTTTGTTGGTAGGTGGTAGTGAAACAACTTTATGGAACCTAAAAAACCCTGATAG
TAATGGAAAATATACAATTGAACGACCAGATAATTTAAATGTTGATTTGGGCGTTACTTCGGCTGGAGCTAGTAGCATAG
CTTTTAGTTTAATTAGTATGTCAGACTTCATGTTGGATTTAGAGTTATCAGCATTGCAGGCTGATGGTTATGGTGAAGTA
ATTTCAACTCCTAAAGTGATGACTGCCGATAAACAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCTTATCAGACTAC
AACAAACTCAGCTGCAGGCTCAACAGCATCAACTTCTTTTAAAGATGCATTGCTAAGTTTAAATGTGACTCCAAGTATTA
CGCCTGACGGTAAAATTCAAATGAAGTTGGATATTTCTAAGGACTCTGTAGCAGGTGCAGCCCCAAATGGTGAATTAATT
CTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAAACCGTTATTTTAGGTGGTGTATTCGAGCAAAC
AACGACGAACTCTCAAACTAAAGTTCCGTTCTTTGGTGATATTCCTTTGGTTGGGCGTTTATTTCGAAAAGATGTAAAGT
CTGATGATAAACAAGAGTTACTGATTTTTGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(551-709)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(39-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

94.598

100

0.953
  pilQ Acinetobacter baumannii strain A118

94.46

100

0.951
  comQ Acinetobacter baylyi ADP1

76.323

100

0.764
  pilQ Pseudomonas aeruginosa PAK

40.028

100

0.406