Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC781_RS16900 Genome accession   NZ_CP061626
Coordinates   3569996..3570523 (-) Length   175 a.a.
NCBI ID   WP_191011550.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3564996..3575523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16880 (IC781_16880) - 3565198..3566072 (-) 875 Protein_3316 hypothetical protein -
  IC781_RS16885 (IC781_16885) aroB 3566088..3567170 (-) 1083 WP_191010555.1 3-dehydroquinate synthase -
  IC781_RS16890 (IC781_16890) aroK 3567199..3567768 (-) 570 WP_191010556.1 shikimate kinase AroK -
  IC781_RS16895 (IC781_16895) pilQ 3567780..3569933 (-) 2154 WP_191010557.1 type IV pilus secretin PilQ family protein Machinery gene
  IC781_RS16900 (IC781_16900) pilP 3569996..3570523 (-) 528 WP_191011550.1 pilus assembly protein PilP Machinery gene
  IC781_RS16905 (IC781_16905) pilO 3570534..3571274 (-) 741 WP_191010558.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC781_RS16910 (IC781_16910) pilN 3571271..3571915 (-) 645 WP_191010559.1 PilN domain-containing protein Machinery gene
  IC781_RS16915 (IC781_16915) pilM 3571915..3572973 (-) 1059 WP_191010560.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19326.51 Da        Isoelectric Point: 9.4007

>NTDB_id=483665 IC781_RS16900 WP_191011550.1 3569996..3570523(-) (pilP) [Acinetobacter seifertii strain AS48]
MKIKQITLYVLACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483665 IC781_RS16900 WP_191011550.1 3569996..3570523(-) (pilP) [Acinetobacter seifertii strain AS48]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCTTGTGCTGCTCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATCGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
GAATAGTCGTGGTCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGCGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.857

100

0.949
  comL Acinetobacter baylyi ADP1

69.767

98.286

0.686