Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC781_RS16910 Genome accession   NZ_CP061626
Coordinates   3571271..3571915 (-) Length   214 a.a.
NCBI ID   WP_191010559.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3566271..3576915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16890 (IC781_16890) aroK 3567199..3567768 (-) 570 WP_191010556.1 shikimate kinase AroK -
  IC781_RS16895 (IC781_16895) pilQ 3567780..3569933 (-) 2154 WP_191010557.1 type IV pilus secretin PilQ family protein Machinery gene
  IC781_RS16900 (IC781_16900) pilP 3569996..3570523 (-) 528 WP_191011550.1 pilus assembly protein PilP Machinery gene
  IC781_RS16905 (IC781_16905) pilO 3570534..3571274 (-) 741 WP_191010558.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC781_RS16910 (IC781_16910) pilN 3571271..3571915 (-) 645 WP_191010559.1 PilN domain-containing protein Machinery gene
  IC781_RS16915 (IC781_16915) pilM 3571915..3572973 (-) 1059 WP_191010560.1 pilus assembly protein PilM Machinery gene
  IC781_RS16920 (IC781_16920) ponA 3573135..3575690 (+) 2556 WP_191010561.1 penicillin-binding protein PBP1a -
  IC781_RS16925 (IC781_16925) - 3575707..3576525 (-) 819 WP_410548919.1 putative RNA methyltransferase -
  IC781_RS16930 (IC781_16930) - 3576534..3576866 (-) 333 WP_191010563.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24129.45 Da        Isoelectric Point: 5.1326

>NTDB_id=483667 IC781_RS16910 WP_191010559.1 3571271..3571915(-) (pilN) [Acinetobacter seifertii strain AS48]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDNYGSFVVTVDLGEMGVTTADNNSDKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483667 IC781_RS16910 WP_191010559.1 3571271..3571915(-) (pilN) [Acinetobacter seifertii strain AS48]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAAAGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTCAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATAATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATTCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

71.09

98.598

0.701