Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IC781_RS16845 Genome accession   NZ_CP061626
Coordinates   3554526..3554987 (-) Length   153 a.a.
NCBI ID   WP_191010548.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3549526..3559987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16825 (IC781_16825) - 3551119..3551499 (+) 381 WP_191010546.1 RidA family protein -
  IC781_RS16830 (IC781_16830) - 3551712..3551906 (+) 195 WP_216135547.1 bacterioferritin-associated ferredoxin -
  IC781_RS16835 (IC781_16835) bfr 3552152..3552616 (+) 465 WP_039246140.1 bacterioferritin -
  IC781_RS16840 (IC781_16840) - 3552657..3554285 (-) 1629 WP_191010547.1 PglL family O-oligosaccharyltransferase -
  IC781_RS16845 (IC781_16845) pilA 3554526..3554987 (-) 462 WP_191010548.1 pilin Machinery gene
  IC781_RS16850 (IC781_16850) - 3555329..3555889 (-) 561 WP_191010549.1 TPM domain-containing protein -
  IC781_RS16855 (IC781_16855) - 3555883..3556965 (-) 1083 WP_191010550.1 TPM domain-containing protein -
  IC781_RS16860 (IC781_16860) - 3556987..3557577 (-) 591 WP_191010551.1 LemA family protein -
  IC781_RS16865 (IC781_16865) - 3557708..3558595 (-) 888 WP_191010552.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15404.53 Da        Isoelectric Point: 7.5875

>NTDB_id=483663 IC781_RS16845 WP_191010548.1 3554526..3554987(-) (pilA) [Acinetobacter seifertii strain AS48]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYVARSQATAGYSEISNMRTGYDTELNDGTAIASLSQVGFTATSSGACS
AIGVTNFGNDGAAANAITCTLKGNPKIAGKIISLSRSATGAWTCSTDIATTDKFLPKGCTGGGTPAVGSITTL

Nucleotide


Download         Length: 462 bp        

>NTDB_id=483663 IC781_RS16845 WP_191010548.1 3554526..3554987(-) (pilA) [Acinetobacter seifertii strain AS48]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTTATGATCGTTGTAGCGATTATTGGTATTTTGGCAGCAATCGCGAT
TCCTGCTTATCAAAATTATGTAGCTCGTTCTCAGGCTACAGCTGGATATTCTGAAATTAGTAACATGCGTACTGGTTATG
ACACTGAATTAAATGATGGTACAGCGATTGCTTCTCTTTCTCAAGTTGGCTTTACTGCGACTTCATCTGGTGCATGTTCA
GCCATAGGTGTTACAAATTTTGGTAACGATGGTGCAGCCGCTAACGCCATTACCTGTACTTTAAAAGGAAATCCAAAAAT
CGCTGGAAAAATTATTTCACTTTCACGTTCAGCGACCGGTGCATGGACTTGTAGTACAGATATTGCCACTACTGACAAAT
TCTTACCAAAAGGGTGTACAGGTGGTGGGACACCAGCTGTTGGTTCAATTACTACTTTGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

62.338

100

0.627
  pilA Pseudomonas aeruginosa PAK

44.371

98.693

0.438
  pilA Vibrio cholerae strain A1552

41.935

100

0.425
  pilA Vibrio cholerae C6706

41.935

100

0.425
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.935

100

0.425
  comP Acinetobacter baylyi ADP1

40.764

100

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.662

92.81

0.405