Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J3Q14_RS03035 Genome accession   NZ_CP071587
Coordinates   591523..591906 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1477     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586523..596906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q14_RS03015 (J3Q14_03015) - 586602..588536 (-) 1935 WP_002856931.1 ribonuclease R family protein -
  J3Q14_RS03020 (J3Q14_03020) ilvC 588655..589677 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  J3Q14_RS03025 (J3Q14_03025) - 589681..590763 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  J3Q14_RS03030 (J3Q14_03030) dprA 590753..591526 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  J3Q14_RS03035 (J3Q14_03035) dprB 591523..591906 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  J3Q14_RS03040 (J3Q14_03040) - 591935..592774 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  J3Q14_RS03045 (J3Q14_03045) msrA 592950..593447 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  J3Q14_RS03050 (J3Q14_03050) ppa 593488..594006 (-) 519 WP_199398783.1 inorganic diphosphatase -
  J3Q14_RS03055 (J3Q14_03055) adk 594016..594594 (-) 579 WP_002855137.1 adenylate kinase -
  J3Q14_RS03060 (J3Q14_03060) aspS 594591..596342 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=478153 J3Q14_RS03035 WP_002856861.1 591523..591906(+) (dprB) [Campylobacter jejuni strain RM1477]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=478153 J3Q14_RS03035 WP_002856861.1 591523..591906(+) (dprB) [Campylobacter jejuni strain RM1477]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449