Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IAE60_RS18330 Genome accession   NZ_CP060731
Coordinates   3903886..3905286 (+) Length   466 a.a.
NCBI ID   WP_187573325.1    Uniprot ID   A0A7G9TCJ0
Organism   Pseudoxanthomonas mexicana strain GTZY2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3898886..3910286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAE60_RS18310 (IAE60_18310) - 3899117..3899692 (-) 576 WP_238394843.1 sigma-70 family RNA polymerase sigma factor -
  IAE60_RS18315 (IAE60_18315) sucD 3899814..3900692 (-) 879 WP_185896917.1 succinate--CoA ligase subunit alpha -
  IAE60_RS18320 (IAE60_18320) sucC 3900788..3901957 (-) 1170 WP_187573323.1 ADP-forming succinate--CoA ligase subunit beta -
  IAE60_RS18325 (IAE60_18325) - 3902158..3903780 (+) 1623 WP_187573324.1 ATP-binding protein -
  IAE60_RS18330 (IAE60_18330) pilR 3903886..3905286 (+) 1401 WP_187573325.1 sigma-54 dependent transcriptional regulator Regulator
  IAE60_RS18335 (IAE60_18335) - 3905303..3905902 (-) 600 WP_187573326.1 methyltransferase domain-containing protein -
  IAE60_RS18340 (IAE60_18340) - 3905899..3906927 (-) 1029 WP_187574812.1 glycosyltransferase family 2 protein -
  IAE60_RS18345 (IAE60_18345) - 3906969..3907763 (-) 795 WP_187573327.1 glycosyltransferase family 2 protein -
  IAE60_RS18350 (IAE60_18350) - 3907760..3908140 (-) 381 WP_187573328.1 hypothetical protein -
  IAE60_RS18355 (IAE60_18355) pilA2 3908582..3908998 (+) 417 WP_187573329.1 pilin Machinery gene

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50514.74 Da        Isoelectric Point: 5.5526

>NTDB_id=478152 IAE60_RS18330 WP_187573325.1 3903886..3905286(+) (pilR) [Pseudoxanthomonas mexicana strain GTZY2]
MNQSRSALIVDDERDIRELLTLTLGRMGLRIDTAANVGEARELLARNTYDLCFTDMRLPDGNGIDLVGEISRNYPNTPVA
MITAFGNIELAVEALKAGAFDFVSKPVDLAVLRGLVKHALELNNADRAPPPPPPPEQASRLLGSSAAMDALRETIAKVAR
SQAPVYIMGESGTGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAANGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGEVQVDVRILSATHKDLGELAADGRFRHDLYYRINVIELRVPPLRERTGDLA
QLTSAILDRLAAQHGRMAPSVSPEAMEALGRYPFPGNVRELENILERALAMSEGHSIEIDDLYLPQAPAGRKFGGDFNPG
EVVRDAPGAVDVDPAAGALPDYIEQLERAAIQKALEENRWNKTKAAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=478152 IAE60_RS18330 WP_187573325.1 3903886..3905286(+) (pilR) [Pseudoxanthomonas mexicana strain GTZY2]
ATGAATCAAAGCCGTAGCGCCCTGATCGTCGACGACGAACGCGACATCCGAGAACTGCTGACACTGACGCTGGGCCGCAT
GGGCCTGCGAATCGACACCGCTGCCAACGTGGGCGAAGCCCGCGAACTGCTGGCCCGCAACACCTACGATCTCTGCTTCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGACCTGGTCGGCGAGATCTCGCGCAACTATCCGAATACGCCAGTGGCG
ATGATCACCGCCTTCGGCAACATCGAGCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCCGT
GGACCTGGCCGTGCTGCGTGGCCTGGTGAAGCATGCGCTGGAACTGAACAACGCCGACCGCGCACCGCCACCCCCGCCGC
CCCCGGAACAGGCCAGCCGCCTGCTGGGCAGTTCGGCGGCGATGGACGCGCTGCGCGAAACCATTGCCAAGGTGGCCCGC
AGCCAGGCGCCGGTCTACATCATGGGCGAGTCCGGCACCGGCAAGGAACTGGTGGCACGCACCATCCACGAACAGGGCGC
GCGCGCGTCCGGCCCCTTCGTACCGGTCAACTGCGGCGCCATTCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAGTTGCCGCTGCCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAGAAGGCGGTGCGTCCGGTCGGCGC
CTCCGGCGAGGTGCAGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGAGCTGGCGGCCGATGGCCGCT
TCCGCCATGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCACGGGCGATCTGGCG
CAGCTGACCAGCGCCATCCTGGATCGCCTGGCGGCCCAGCACGGGCGCATGGCGCCGTCGGTGTCGCCGGAAGCGATGGA
GGCGCTGGGGCGCTATCCGTTCCCGGGGAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCCATGTCCGAGG
GCCACAGCATCGAGATCGACGACCTGTACCTGCCGCAGGCCCCGGCCGGCAGGAAGTTCGGCGGCGACTTCAACCCCGGC
GAAGTGGTGCGCGACGCGCCCGGCGCCGTCGACGTGGACCCGGCCGCGGGCGCCCTGCCCGACTACATCGAGCAGCTCGA
GCGCGCGGCCATCCAGAAGGCGCTGGAGGAGAACCGCTGGAACAAGACCAAGGCGGCGGCCCAGCTGGGCATCACCTTCC
GCGCCTTGCGCTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9TCJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.935

99.785

0.618
  pilR Acinetobacter baumannii strain A118

48.498

100

0.485