Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H9L01_RS03410 Genome accession   NZ_CP060715
Coordinates   702100..702537 (+) Length   145 a.a.
NCBI ID   WP_187534629.1    Uniprot ID   A0A7G9S0Q3
Organism   Erysipelothrix inopinata strain DSM 15511     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 697100..707537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L01_RS03390 (H9L01_03390) hslO 698320..699195 (+) 876 WP_187534625.1 Hsp33 family molecular chaperone HslO -
  H9L01_RS03395 (H9L01_03395) lysS 699325..700818 (+) 1494 WP_187534626.1 lysine--tRNA ligase -
  H9L01_RS03400 (H9L01_03400) - 701022..701657 (+) 636 WP_187534627.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  H9L01_RS03405 (H9L01_03405) rpsF 701793..702086 (+) 294 WP_187534628.1 30S ribosomal protein S6 -
  H9L01_RS03410 (H9L01_03410) ssbA 702100..702537 (+) 438 WP_187534629.1 single-stranded DNA-binding protein Machinery gene
  H9L01_RS03415 (H9L01_03415) rpsR 702556..702789 (+) 234 WP_187534630.1 30S ribosomal protein S18 -
  H9L01_RS03420 (H9L01_03420) - 702847..703398 (+) 552 WP_187534631.1 DUF2232 domain-containing protein -
  H9L01_RS03425 (H9L01_03425) - 703465..705420 (+) 1956 WP_187534632.1 DHH family phosphoesterase -
  H9L01_RS03430 (H9L01_03430) rplI 705422..705871 (+) 450 WP_187534633.1 50S ribosomal protein L9 -
  H9L01_RS03435 (H9L01_03435) dnaB 705880..707244 (+) 1365 WP_187534634.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16230.99 Da        Isoelectric Point: 4.5280

>NTDB_id=477986 H9L01_RS03410 WP_187534629.1 702100..702537(+) (ssbA) [Erysipelothrix inopinata strain DSM 15511]
MINRTILVGRLTRDPELRKTNTGKSVASFTLACNRRFGQQEQADFINCVAWEKSAEFLANYLSKGALISVEGRIQSRSYE
DATGKRVYVQEVVAETIQSLESKAQSQRTQASQDSFQPSYQADPEPSFSVDDEPVLDITSDDLPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=477986 H9L01_RS03410 WP_187534629.1 702100..702537(+) (ssbA) [Erysipelothrix inopinata strain DSM 15511]
ATGATTAATCGCACTATATTAGTGGGTCGTTTGACTCGAGACCCAGAACTTCGTAAAACTAATACTGGAAAATCAGTTGC
CTCATTTACGCTTGCATGCAATCGTAGATTTGGACAACAAGAACAAGCGGACTTTATCAATTGTGTTGCTTGGGAAAAAA
GTGCTGAATTTCTTGCTAACTACTTATCAAAGGGTGCTTTAATAAGTGTTGAAGGACGAATTCAATCGAGATCATATGAA
GATGCTACTGGCAAACGTGTTTATGTTCAAGAAGTTGTTGCGGAAACAATACAATCTCTAGAATCAAAAGCGCAAAGTCA
AAGAACGCAGGCTTCACAAGATAGTTTTCAACCATCTTATCAAGCTGATCCAGAACCATCATTCTCTGTGGATGATGAAC
CAGTTCTTGACATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9S0Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.75

100

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

41.52

100

0.49
  ssb Neisseria gonorrhoeae MS11

34.104

100

0.407
  ssb Neisseria meningitidis MC58

34.104

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.739

82.069

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

48.739

82.069

0.4
  ssbB/cilA Streptococcus mitis SK321

48.739

82.069

0.4
  ssbB/cilA Streptococcus pneumoniae D39

47.899

82.069

0.393
  ssbB/cilA Streptococcus pneumoniae Rx1

47.899

82.069

0.393
  ssbB/cilA Streptococcus pneumoniae R6

47.899

82.069

0.393
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.926

74.483

0.379
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

73.103

0.366
  ssbA Streptococcus mutans UA159

49.074

74.483

0.366