NTDB

Overview

Name	comGC	Type	Machinery gene
Locus tag	HUG14_RS02900	Genome accession	NZ_CP060580
Coordinates	581743..582126 (-)	Length	127 a.a.
NCBI ID	WP_080735951.1	Uniprot ID	-
Organism	Lactococcus lactis strain K_LL005
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 576743..587126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUG14_RS02860 (HUG14_02860)	-	577279..578088 (-)	810	WP_033900712.1	metal ABC transporter permease	-
HUG14_RS02865 (HUG14_02865)	-	578081..578818 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
HUG14_RS02870 (HUG14_02870)	-	578995..579837 (-)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
HUG14_RS02875 (HUG14_02875)	-	579834..580271 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
HUG14_RS02880 (HUG14_02880)	comGG	580352..580636 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
HUG14_RS02885 (HUG14_02885)	comGF	580675..581121 (-)	447	WP_058203710.1	competence type IV pilus minor pilin ComGF	Machinery gene
HUG14_RS02890 (HUG14_02890)	comGE	581084..581380 (-)	297	WP_033900709.1	competence type IV pilus minor pilin ComGE	Machinery gene
HUG14_RS02895 (HUG14_02895)	comGD	581352..581750 (-)	399	WP_233610962.1	competence type IV pilus minor pilin ComGD	Machinery gene
HUG14_RS02900 (HUG14_02900)	comGC	581743..582126 (-)	384	WP_080735951.1	competence type IV pilus major pilin ComGC	Machinery gene
HUG14_RS02905 (HUG14_02905)	comGB	582140..583213 (-)	1074	WP_080735950.1	competence type IV pilus assembly protein ComGB	Machinery gene
HUG14_RS02910 (HUG14_02910)	comGA	583107..584045 (-)	939	WP_033900707.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

Download Length: 127 a.a. Molecular weight: 14839.44 Da Isoelectric Point: 8.4563

                                >NTDB_id=476643 HUG14_RS02900 WP_080735951.1 581743..582126(-) (comGC) [Lactococcus lactis strain K_LL005]

MERTKKFILKKIQKIFLFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA

QLYELDHDDEKPTLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

Download Length: 384 bp

                                >NTDB_id=476643 HUG14_RS02900 WP_080735951.1 581743..582126(-) (comGC) [Lactococcus lactis strain K_LL005]

ATGGAAAGAACTAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG

TCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG

TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTGAAAGTAGTAGAAAGTCAAGCC

CAACTTTATGAATTAGATCATGATGATGAGAAGCCGACTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA

AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(32-52)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	57.426	79.528	0.457
comYC	Streptococcus mutans UA140	57.426	79.528	0.457
comYC	Streptococcus gordonii str. Challis substr. CH1	56.566	77.953	0.441
comGC/cglC	Streptococcus mitis SK321	54.455	79.528	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae Rx1	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae D39	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae R6	52.475	79.528	0.417
comGC/cglC	Streptococcus mitis NCTC 12261	56.18	70.079	0.394
comYC	Streptococcus suis isolate S10	56.818	69.291	0.394

Detailed information NTG0476643