Detailed information NTG0476639

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JZY07_RS00300
• Genome accession: NZ_CP071305
• Coordinates: 49407..50411 (+)
• Length: 334 a.a.
• NCBI ID: WP_024399968.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SC183
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 44407..55411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZY07_RS00280 (JZY07_00280)	-	45554..46378 (+)	825	WP_024399964.1	ABC transporter ATP-binding protein	-
JZY07_RS00285 (JZY07_00285)	-	46371..47114 (+)	744	WP_024412037.1	ABC transporter permease	-
JZY07_RS00290 (JZY07_00290)	-	47440..48168 (+)	729	WP_024399966.1	hypothetical protein	-
JZY07_RS00295 (JZY07_00295)	-	48194..49066 (+)	873	WP_024399967.1	ABC transporter ATP-binding protein	-
JZY07_RS00300 (JZY07_00300)	ruvB	49407..50411 (+)	1005	WP_024399968.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JZY07_RS00305 (JZY07_00305)	-	50411..51157 (+)	747	WP_024399969.1	GNAT family N-acetyltransferase	-
JZY07_RS00310 (JZY07_00310)	-	51159..51797 (+)	639	WP_024399970.1	HAD-IA family hydrolase	-
JZY07_RS00315 (JZY07_00315)	comR	52044..52961 (+)	918	WP_024399971.1	helix-turn-helix domain-containing protein	Regulator
JZY07_RS00320 (JZY07_00320)	-	53226..54446 (+)	1221	WP_024399972.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37756.22 Da
• Isoelectric Point: 4.4092

>NTDB_id=476639 JZY07_RS00300 WP_024399968.1 49407..50411(+) (ruvB) [Streptococcus suis strain SC183]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFIIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLDLPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELDDLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRAMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEEK

Nucleotide

• Length: 1005 bp

>NTDB_id=476639 JZY07_RS00300 WP_024399968.1 49407..50411(+) (ruvB) [Streptococcus suis strain SC183]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTACGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGTTGAAAATCTTTATCGAGGCGGCAAAACTCCGTGATGAAGCCTTGG
ACCATACTCTTCTTTTTGGTCCTCCAGGTTTAGGTAAAACCACTATGGCCTTTATCATTGCAAATGAACTAGGGGTGAAT
ATCAAGCAGACTAGCGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGCCGCTCGGTCCATTTGGATTTGCCGCCTTTCACTTTGATAGGAGCGACAACG
CGTGCGGGCATGCTATCCAATCCTCTGCGGGCCCGCTTTGGCATCACCGGTCACATGGAATATTATGAGCTGGATGATTT
GACCGAGATTGTGGAGCGGACTGCCGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGATAAGGCCCTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCGCCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	88.822	99.102	0.88
ruvB	Streptococcus pneumoniae R6	88.52	99.102	0.877
ruvB	Streptococcus pneumoniae D39	88.52	99.102	0.877
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.202	97.605	0.578
ruvB	Helicobacter pylori 26695	51.672	98.503	0.509
ruvB	Synechocystis sp. PCC 6803	50.799	93.713	0.476