Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JZY07_RS00335 Genome accession   NZ_CP071305
Coordinates   58254..58844 (+) Length   196 a.a.
NCBI ID   WP_024399975.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53254..63844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS00325 (JZY07_00325) - 54637..56160 (+) 1524 WP_024399973.1 quinol oxidase -
  JZY07_RS00330 (JZY07_00330) hexB 56278..58215 (+) 1938 WP_024399974.1 DNA mismatch repair endonuclease MutL Machinery gene
  JZY07_RS00335 (JZY07_00335) ruvA 58254..58844 (+) 591 WP_024399975.1 Holliday junction branch migration protein RuvA Machinery gene
  JZY07_RS00340 (JZY07_00340) - 58853..59494 (+) 642 WP_024399976.1 hypothetical protein -
  JZY07_RS00345 (JZY07_00345) - 59511..60071 (+) 561 WP_024399977.1 DNA-3-methyladenine glycosylase I -
  JZY07_RS00350 (JZY07_00350) - 60145..60555 (+) 411 WP_024399978.1 helix-turn-helix transcriptional regulator -
  JZY07_RS00355 (JZY07_00355) - 60528..61193 (+) 666 WP_024412038.1 type II CAAX endopeptidase family protein -
  JZY07_RS00360 (JZY07_00360) cinA 61338..62519 (+) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  JZY07_RS00365 (JZY07_00365) recA 62571..63722 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21765.10 Da        Isoelectric Point: 5.0784

>NTDB_id=476642 JZY07_RS00335 WP_024399975.1 58254..58844(+) (ruvA) [Streptococcus suis strain SC183]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQEVPTSENVALDEAMEAME
ALGYRPAELKKIKKFFDGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=476642 JZY07_RS00335 WP_024399975.1 58254..58844(+) (ruvA) [Streptococcus suis strain SC183]
ATGTACGACTATATTAAAGGAATTTTAACGAAAATAACTGCAAAATATATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTTCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAGAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAACAGATGATTTTGGATCTAGAAGGCAAGTTTGTCATGA
GTGAGGAGGCAGGACCTGTCCAACAAGAAGTACCTACTAGTGAAAATGTTGCACTTGATGAAGCCATGGAAGCTATGGAA
GCACTCGGTTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGACGGCACTACCGACACCGCTGAGAATTACAT
CAAGTCCGCCCTCAAGATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.546

100

0.439