Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOC63_RS06200 Genome accession   NZ_CP054015
Coordinates   1223074..1223517 (+) Length   147 a.a.
NCBI ID   WP_009853511.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1206169..1251456 1223074..1223517 within 0


Gene organization within MGE regions


Location: 1206169..1251456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS06080 (FOC63_06080) - 1206169..1206912 (+) 744 WP_009853486.1 amino acid ABC transporter ATP-binding protein -
  FOC63_RS06085 (FOC63_06085) - 1207003..1207227 (+) 225 WP_009853487.1 DUF4059 family protein -
  FOC63_RS06090 (FOC63_06090) trxB 1207291..1208205 (+) 915 WP_009853488.1 thioredoxin-disulfide reductase -
  FOC63_RS06095 (FOC63_06095) - 1208503..1209663 (-) 1161 WP_009853489.1 tyrosine-type recombinase/integrase -
  FOC63_RS06100 (FOC63_06100) - 1210003..1211598 (-) 1596 WP_009853490.1 SIR2 family protein -
  FOC63_RS06105 (FOC63_06105) - 1211849..1212310 (-) 462 WP_043878514.1 TM2 domain-containing protein -
  FOC63_RS06110 (FOC63_06110) - 1212364..1213104 (-) 741 WP_009853492.1 hypothetical protein -
  FOC63_RS06115 (FOC63_06115) - 1213107..1213844 (-) 738 WP_009853493.1 XRE family transcriptional regulator -
  FOC63_RS06120 (FOC63_06120) - 1214210..1214368 (+) 159 WP_009853494.1 hypothetical protein -
  FOC63_RS06125 (FOC63_06125) - 1214511..1215002 (-) 492 WP_043878515.1 hypothetical protein -
  FOC63_RS06130 (FOC63_06130) - 1215060..1215272 (+) 213 WP_009853496.1 helix-turn-helix transcriptional regulator -
  FOC63_RS06135 (FOC63_06135) - 1215301..1216188 (+) 888 WP_009853497.1 DUF3102 domain-containing protein -
  FOC63_RS06140 (FOC63_06140) - 1216191..1217030 (+) 840 WP_009853498.1 ParB N-terminal domain-containing protein -
  FOC63_RS06145 (FOC63_06145) - 1217436..1217705 (+) 270 WP_009853499.1 hypothetical protein -
  FOC63_RS06150 (FOC63_06150) - 1217640..1218446 (-) 807 WP_009853500.1 TIGR02391 family protein -
  FOC63_RS06155 (FOC63_06155) - 1218496..1218696 (+) 201 WP_009853501.1 ATP synthase F0 subunit B -
  FOC63_RS06160 (FOC63_06160) - 1218680..1219039 (-) 360 WP_009853502.1 hypothetical protein -
  FOC63_RS06165 (FOC63_06165) - 1219140..1219391 (+) 252 WP_043878516.1 hypothetical protein -
  FOC63_RS06170 (FOC63_06170) - 1219676..1220578 (+) 903 WP_009853505.1 phage replisome organizer N-terminal domain-containing protein -
  FOC63_RS06175 (FOC63_06175) - 1220581..1220835 (+) 255 WP_009853506.1 hypothetical protein -
  FOC63_RS06180 (FOC63_06180) - 1220835..1221056 (+) 222 WP_009853507.1 hypothetical protein -
  FOC63_RS06185 (FOC63_06185) - 1221056..1221310 (+) 255 WP_009853508.1 hypothetical protein -
  FOC63_RS06190 (FOC63_06190) bet 1221322..1222053 (+) 732 WP_009853509.1 phage recombination protein Bet -
  FOC63_RS06195 (FOC63_06195) - 1222067..1223065 (+) 999 WP_009853510.1 DUF1351 domain-containing protein -
  FOC63_RS06200 (FOC63_06200) ssbA 1223074..1223517 (+) 444 WP_009853511.1 single-stranded DNA-binding protein Machinery gene
  FOC63_RS06205 (FOC63_06205) - 1223529..1223975 (+) 447 WP_009853512.1 RusA family crossover junction endodeoxyribonuclease -
  FOC63_RS06210 (FOC63_06210) - 1224112..1224372 (+) 261 WP_009853514.1 PIN domain protein -
  FOC63_RS06215 (FOC63_06215) - 1224426..1224596 (+) 171 WP_155734604.1 hypothetical protein -
  FOC63_RS06220 (FOC63_06220) - 1224589..1224753 (+) 165 WP_172855741.1 hypothetical protein -
  FOC63_RS06225 (FOC63_06225) - 1224746..1225276 (+) 531 WP_009853517.1 DUF1642 domain-containing protein -
  FOC63_RS06230 (FOC63_06230) - 1225437..1225823 (+) 387 WP_009853519.1 YopX family protein -
  FOC63_RS06235 (FOC63_06235) - 1225820..1226068 (+) 249 WP_009853520.1 hypothetical protein -
  FOC63_RS06240 (FOC63_06240) - 1226789..1227199 (+) 411 WP_009853522.1 DUF1492 domain-containing protein -
  FOC63_RS06245 (FOC63_06245) - 1227377..1227985 (+) 609 WP_009853523.1 hypothetical protein -
  FOC63_RS06250 (FOC63_06250) - 1228098..1228529 (+) 432 WP_009853524.1 terminase small subunit -
  FOC63_RS06255 (FOC63_06255) - 1228519..1229769 (+) 1251 WP_009853525.1 PBSX family phage terminase large subunit -
  FOC63_RS06260 (FOC63_06260) - 1229781..1231313 (+) 1533 WP_009853526.1 phage portal protein -
  FOC63_RS06265 (FOC63_06265) - 1231282..1232250 (+) 969 WP_009853527.1 minor capsid protein -
  FOC63_RS06270 (FOC63_06270) - 1232267..1232413 (+) 147 WP_009853528.1 hypothetical protein -
  FOC63_RS06280 (FOC63_06280) - 1232705..1233349 (+) 645 WP_009853529.1 DUF4355 domain-containing protein -
  FOC63_RS06285 (FOC63_06285) - 1233362..1233739 (+) 378 WP_009853530.1 hypothetical protein -
  FOC63_RS06290 (FOC63_06290) - 1233744..1234793 (+) 1050 WP_009853531.1 major capsid protein -
  FOC63_RS06295 (FOC63_06295) - 1234809..1234958 (+) 150 WP_009853532.1 hypothetical protein -
  FOC63_RS06300 (FOC63_06300) - 1234967..1235311 (+) 345 WP_009853533.1 phage head-tail connector protein -
  FOC63_RS06305 (FOC63_06305) - 1235308..1235625 (+) 318 WP_009853534.1 hypothetical protein -
  FOC63_RS06310 (FOC63_06310) - 1235618..1235971 (+) 354 WP_009853535.1 HK97-gp10 family putative phage morphogenesis protein -
  FOC63_RS06315 (FOC63_06315) - 1235961..1236350 (+) 390 WP_009853536.1 hypothetical protein -
  FOC63_RS06320 (FOC63_06320) - 1236360..1236842 (+) 483 WP_009853537.1 phage major tail protein, TP901-1 family -
  FOC63_RS06325 (FOC63_06325) - 1236895..1237245 (+) 351 WP_009853538.1 tail assembly chaperone -
  FOC63_RS06330 (FOC63_06330) - 1237281..1237631 (+) 351 WP_172855742.1 hypothetical protein -
  FOC63_RS06335 (FOC63_06335) - 1237624..1240707 (+) 3084 WP_009853540.1 phage tail tape measure protein -
  FOC63_RS06340 (FOC63_06340) - 1240700..1241578 (+) 879 WP_009853541.1 distal tail protein Dit -
  FOC63_RS06345 (FOC63_06345) - 1241657..1242256 (+) 600 WP_009853542.1 hypothetical protein -
  FOC63_RS06350 (FOC63_06350) - 1242253..1246629 (+) 4377 WP_009853543.1 hypothetical protein -
  FOC63_RS06355 (FOC63_06355) - 1246645..1246980 (+) 336 WP_009853544.1 hypothetical protein -
  FOC63_RS06360 (FOC63_06360) - 1246996..1247271 (+) 276 WP_009853545.1 DUF7365 family protein -
  FOC63_RS06365 (FOC63_06365) - 1247268..1247531 (+) 264 WP_009853546.1 hypothetical protein -
  FOC63_RS06370 (FOC63_06370) - 1247521..1248804 (+) 1284 WP_009853547.1 LysM peptidoglycan-binding domain-containing protein -
  FOC63_RS06375 (FOC63_06375) - 1249077..1249505 (+) 429 WP_009853548.1 Panacea domain-containing protein -
  FOC63_RS06380 (FOC63_06380) - 1249492..1250550 (+) 1059 WP_009853549.1 hypothetical protein -
  FOC63_RS06385 (FOC63_06385) - 1250872..1251456 (+) 585 WP_043878633.1 MarC family protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16298.98 Da        Isoelectric Point: 5.1169

>NTDB_id=450157 FOC63_RS06200 WP_009853511.1 1223074..1223517(+) (ssbA) [Streptococcus gallolyticus strain FDAARGOS_755]
MNNVNLIGRLTKAPELKQTASNTSVLTGTLAVNRTFKSQNGEREADFINIVAWRQTAEIIAQYCGKGSQIGITGRIQTRN
YENQQGQRVYVTEVVAEHVDLLDGKSDGQQGQSNGYNQQPQQNSYMQQGNPFGNSNPMDISDDMLPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=450157 FOC63_RS06200 WP_009853511.1 1223074..1223517(+) (ssbA) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGAACAACGTAAATCTAATCGGTCGCTTAACAAAAGCGCCAGAATTAAAACAAACAGCGAGCAACACAAGCGTATTAAC
AGGAACGCTTGCTGTAAATCGCACATTTAAGAGCCAAAACGGCGAACGTGAAGCAGACTTCATTAATATTGTCGCTTGGC
GACAAACAGCGGAAATCATCGCACAATATTGCGGCAAAGGTTCGCAAATTGGAATTACTGGTCGTATTCAGACACGTAAC
TATGAGAATCAGCAAGGACAGCGTGTGTATGTAACTGAAGTAGTAGCTGAACACGTCGACTTGCTAGATGGCAAGAGCGA
CGGCCAGCAAGGACAGTCGAACGGTTACAATCAACAACCACAGCAAAACAGCTATATGCAGCAGGGAAATCCATTTGGTA
ATTCAAATCCAATGGACATTTCAGATGACATGCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.047

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

100

0.531
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.238

71.429

0.395
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.877

77.551

0.395
  ssb Vibrio cholerae strain A1552

32.759

100

0.388
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.368

77.551

0.367
  ssb Glaesserella parasuis strain SC1401

29.944

100

0.361
  ssbA Streptococcus mutans UA159

45.69

78.912

0.361
  ssbB/cilA Streptococcus mitis NCTC 12261

46.491

77.551

0.361
  ssbB/cilA Streptococcus pneumoniae Rx1

46.491

77.551

0.361
  ssbB/cilA Streptococcus mitis SK321

46.491

77.551

0.361
  ssbB/cilA Streptococcus pneumoniae D39

46.491

77.551

0.361
  ssbB/cilA Streptococcus pneumoniae R6

46.491

77.551

0.361