Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   FOC63_RS05640 Genome accession   NZ_CP054015
Coordinates   1118044..1118529 (+) Length   161 a.a.
NCBI ID   WP_043913843.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113044..1123529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS05640 (FOC63_05640) comX/sigX 1118044..1118529 (+) 486 WP_043913843.1 sigma-70 family RNA polymerase sigma factor Regulator
  FOC63_RS05645 (FOC63_05645) - 1118641..1120263 (-) 1623 WP_009853408.1 glycoside hydrolase family 5 protein -
  FOC63_RS05650 (FOC63_05650) - 1120712..1122073 (-) 1362 WP_009853409.1 aspartate kinase -
  FOC63_RS05655 (FOC63_05655) - 1122167..1122814 (+) 648 WP_009853410.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19336.21 Da        Isoelectric Point: 7.9985

>NTDB_id=450155 FOC63_RS05640 WP_043913843.1 1118044..1118529(+) (comX/sigX) [Streptococcus gallolyticus strain FDAARGOS_755]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=450155 FOC63_RS05640 WP_043913843.1 1118044..1118529(+) (comX/sigX) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.