Detailed information NTG0449945

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: I5367_RS02305
• Genome accession: NZ_CP065539
• Coordinates: 456513..457646 (+)
• Length: 377 a.a.
• NCBI ID: WP_012116843.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain DGL1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 451513..462646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5367_RS02270 (I5367_02270)	-	452103..452549 (+)	447	WP_012116838.1	NUDIX hydrolase	-
I5367_RS02275 (I5367_02275)	-	452607..454328 (+)	1722	WP_012116839.1	pyruvate oxidase	-
I5367_RS02280 (I5367_02280)	-	454444..454880 (-)	437	Protein_411	GNAT family N-acetyltransferase	-
I5367_RS19295	-	454989..455110 (+)	122	Protein_412	peptidoglycan-binding domain-containing protein	-
I5367_RS02290 (I5367_02290)	-	455317..455529 (-)	213	WP_012116841.1	spore germination protein	-
I5367_RS19300	-	455911..456204 (+)	294	WP_023356715.1	hypothetical protein	-
I5367_RS02300 (I5367_02300)	-	456173..456376 (+)	204	WP_077411029.1	DUF2651 family protein	-
I5367_RS02305 (I5367_02305)	rapC	456513..457646 (+)	1134	WP_012116843.1	Rap family tetratricopeptide repeat protein	Regulator
I5367_RS19440	-	457643..457777 (+)	135	WP_007609509.1	hypothetical protein	-
I5367_RS19305	-	458128..458358 (-)	231	WP_012116845.1	hypothetical protein	-
I5367_RS02310 (I5367_02310)	-	458739..459296 (-)	558	WP_012116846.1	hypothetical protein	-
I5367_RS02315 (I5367_02315)	-	459393..459971 (-)	579	WP_012116847.1	hypothetical protein	-
I5367_RS02320 (I5367_02320)	-	460197..460463 (-)	267	WP_012116848.1	hypothetical protein	-
I5367_RS02325 (I5367_02325)	-	460568..461845 (-)	1278	WP_123912783.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44756.16 Da
• Isoelectric Point: 5.3016

>NTDB_id=449945 I5367_RS02305 WP_012116843.1 456513..457646(+) (rapC) [Bacillus amyloliquefaciens strain DGL1]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELSAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS

Nucleotide

• Length: 1134 bp

>NTDB_id=449945 I5367_RS02305 WP_012116843.1 456513..457646(+) (rapC) [Bacillus amyloliquefaciens strain DGL1]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAGTGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
AAGAGGAAAAAGTGAAAAGAATTATCGGAGTGATTTTTCATAACTTAGGTTTAGTTTATTTAAGAGGGAAAAATTTAATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCAAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAAAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (142-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.802	98.939	0.374