Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   FOC73_RS04685 Genome accession   NZ_CP053998
Coordinates   988413..989369 (-) Length   318 a.a.
NCBI ID   WP_002885753.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 983413..994369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS04655 (FOC73_04655) proC 983951..984721 (+) 771 WP_002885846.1 pyrroline-5-carboxylate reductase -
  FOC73_RS04660 (FOC73_04660) - 984748..985410 (-) 663 WP_002885821.1 CPBP family intramembrane glutamic endopeptidase -
  FOC73_RS04665 (FOC73_04665) - 985523..985969 (-) 447 WP_002885743.1 hypothetical protein -
  FOC73_RS04670 (FOC73_04670) - 986047..986703 (-) 657 WP_002885876.1 CPBP family intramembrane glutamic endopeptidase -
  FOC73_RS04675 (FOC73_04675) - 986715..986912 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  FOC73_RS04680 (FOC73_04680) - 987163..988356 (-) 1194 WP_002885831.1 acetate kinase -
  FOC73_RS04685 (FOC73_04685) comYH 988413..989369 (-) 957 WP_002885753.1 class I SAM-dependent methyltransferase Machinery gene
  FOC73_RS04690 (FOC73_04690) comGG 989414..989731 (-) 318 WP_037605448.1 competence type IV pilus minor pilin ComGG -
  FOC73_RS04695 (FOC73_04695) comYF 989709..990146 (-) 438 WP_002885762.1 competence type IV pilus minor pilin ComGF Machinery gene
  FOC73_RS04700 (FOC73_04700) comGE 990133..990363 (-) 231 WP_002885825.1 competence type IV pilus minor pilin ComGE -
  FOC73_RS04705 (FOC73_04705) comYD 990395..990823 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOC73_RS04710 (FOC73_04710) comYC 990783..991097 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  FOC73_RS04715 (FOC73_04715) comYB 991106..992206 (-) 1101 WP_157747911.1 competence type IV pilus assembly protein ComGB Machinery gene
  FOC73_RS04720 (FOC73_04720) comYA 992088..993029 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC73_RS04725 (FOC73_04725) - 993109..993471 (-) 363 WP_002885749.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35775.66 Da        Isoelectric Point: 4.3482

>NTDB_id=449940 FOC73_RS04685 WP_002885753.1 988413..989369(-) (comYH) [Streptococcus salivarius strain FDAARGOS_771]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=449940 FOC73_RS04685 WP_002885753.1 988413..989369(-) (comYH) [Streptococcus salivarius strain FDAARGOS_771]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATTAAACTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCGGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGCATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGATCTACCTGTTGG
TTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACCGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACCCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698