Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   HQM26_RS14295 Genome accession   NZ_CP053920
Coordinates   3086375..3087511 (+) Length   378 a.a.
NCBI ID   WP_003068462.1    Uniprot ID   A0A5S4T690
Organism   Comamonas thiooxydans strain QYY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3081375..3092511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQM26_RS14275 - 3082205..3082975 (+) 771 WP_054073746.1 TetR/AcrR family transcriptional regulator -
  HQM26_RS14280 - 3083022..3084269 (+) 1248 WP_054073745.1 branched-chain amino acid ABC transporter substrate-binding protein -
  HQM26_RS14285 - 3084426..3085148 (-) 723 WP_054073744.1 YggS family pyridoxal phosphate-dependent enzyme -
  HQM26_RS14290 pilT 3085186..3086229 (+) 1044 WP_003068464.1 type IV pilus twitching motility protein PilT Machinery gene
  HQM26_RS14295 pilU 3086375..3087511 (+) 1137 WP_003068462.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  HQM26_RS14300 - 3087656..3088567 (+) 912 WP_034354990.1 NAD(P)-dependent oxidoreductase -
  HQM26_RS14305 - 3088629..3089282 (-) 654 WP_012840075.1 BON domain-containing protein -
  HQM26_RS14310 - 3089279..3089887 (-) 609 WP_003068456.1 SIS domain-containing protein -
  HQM26_RS14315 - 3089977..3090378 (-) 402 WP_003068453.1 YraN family protein -
  HQM26_RS14320 rsmI 3090378..3091301 (+) 924 WP_054073743.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42062.55 Da        Isoelectric Point: 6.7687

>NTDB_id=448951 HQM26_RS14295 WP_003068462.1 3086375..3087511(+) (pilU) [Comamonas thiooxydans strain QYY]
MERDQASKFINDLLKLMVSRNGSDLFITAEFPPAIKIDGKVTKVSPQPLNQLHTLALARSIMNDRQVADFEHTKECNFAI
SPAGVGRFRVNAFMQQGKVGMVLRTIPSTLPTIDGLGVPQVLKEVTMTKRGLCILVGATGSGKSTTLAAMVDWRNENSFG
HIITVEDPVEFVHPHKNCVVTQREVGLDTESWEAALKNTLRQAPDVILMGEIRDRETMEHAIAFSETGHLCLATLHANSA
NQALDRIVNFFPEERRPQLLMDVSLNLRAIISQRLIPKQDSKGRVAAIEVMLNSPLIADLIFKGEVVEIKEIMKKSRNIG
MQTFDQALFDLFESNLITYEDALRNADSVNDLRLQIKLNSQRARTLDLAAGTEHLTIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=448951 HQM26_RS14295 WP_003068462.1 3086375..3087511(+) (pilU) [Comamonas thiooxydans strain QYY]
ATGGAACGCGATCAGGCCAGTAAATTCATCAACGATCTGCTCAAGCTCATGGTCAGCCGCAACGGCAGCGACCTGTTCAT
CACTGCAGAGTTTCCGCCCGCCATCAAGATTGACGGCAAAGTCACCAAGGTTTCGCCACAGCCGCTGAACCAGTTGCATA
CGCTGGCCCTGGCGCGTTCCATCATGAACGACAGGCAGGTGGCGGACTTCGAACACACCAAGGAGTGCAACTTCGCCATC
TCGCCTGCCGGTGTGGGGCGCTTCCGTGTCAACGCCTTCATGCAACAGGGCAAGGTCGGCATGGTGCTGCGTACCATTCC
CAGCACCCTGCCCACGATTGACGGCCTGGGCGTGCCGCAGGTTCTCAAGGAAGTGACCATGACCAAGCGCGGCCTGTGCA
TCCTGGTCGGCGCGACGGGCTCGGGCAAATCCACCACGCTGGCCGCCATGGTGGACTGGCGCAACGAGAACTCCTTCGGC
CACATCATCACCGTGGAAGATCCCGTGGAATTCGTGCATCCGCACAAGAACTGCGTGGTCACGCAACGCGAGGTGGGCCT
GGACACTGAGAGCTGGGAAGCCGCTCTCAAGAACACGCTGCGCCAGGCGCCCGATGTGATTCTGATGGGCGAAATCCGCG
ACCGCGAAACCATGGAGCACGCGATTGCGTTCTCGGAAACCGGGCATCTATGTCTGGCCACGCTGCACGCCAACAGTGCC
AACCAGGCTCTGGACCGCATCGTCAACTTCTTCCCCGAAGAGCGCCGTCCGCAACTGCTGATGGACGTGTCGCTAAATCT
GCGGGCCATCATTTCCCAGCGCCTGATCCCCAAGCAGGACAGCAAGGGCCGTGTCGCCGCCATCGAGGTGATGCTCAACT
CTCCGCTGATCGCCGACCTGATCTTCAAGGGCGAAGTCGTCGAGATCAAGGAGATCATGAAGAAAAGCCGCAACATCGGC
ATGCAGACCTTTGACCAGGCGCTGTTCGACCTGTTCGAGTCCAATCTCATCACCTATGAAGACGCGCTGCGCAATGCAGA
CTCGGTCAACGACCTGCGTCTGCAGATCAAGCTCAACAGCCAGCGTGCCCGGACTCTGGACCTGGCGGCCGGCACCGAGC
ATCTGACCATCGTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T690

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

60.656

96.825

0.587
  pilU Acinetobacter baylyi ADP1

55.71

94.974

0.529
  pilU Vibrio cholerae strain A1552

53.736

92.063

0.495
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.104

89.153

0.402
  pilT Pseudomonas aeruginosa PAK

44.51

89.153

0.397
  pilT Pseudomonas stutzeri DSM 10701

43.027

89.153

0.384
  pilT Acinetobacter nosocomialis M2

43.243

88.095

0.381
  pilT Acinetobacter baumannii strain A118

43.243

88.095

0.381
  pilT Acinetobacter baumannii D1279779

43.243

88.095

0.381
  pilT Legionella pneumophila strain ERS1305867

42.943

88.095

0.378
  pilT Legionella pneumophila strain Lp02

42.943

88.095

0.378
  pilT Acinetobacter baylyi ADP1

42.073

86.772

0.365