NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	HGP31_RS26750	Genome accession	NZ_CP051487
Coordinates	5920162..5920581 (-)	Length	139 a.a.
NCBI ID	WP_020798602.1	Uniprot ID	-
Organism	Pseudomonas umsongensis strain CY-1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5915162..5925581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGP31_RS26735 (HGP31_26735)	-	5915270..5916286 (+)	1017	WP_168758955.1	class I SAM-dependent rRNA methyltransferase	-
HGP31_RS26740 (HGP31_26740)	-	5916380..5919334 (+)	2955	WP_168758956.1	DUF748 domain-containing protein	-
HGP31_RS26745 (HGP31_26745)	-	5919497..5919850 (-)	354	WP_168758957.1	BON domain-containing protein	-
HGP31_RS26750 (HGP31_26750)	pilA	5920162..5920581 (-)	420	WP_020798602.1	pilin	Machinery gene
HGP31_RS26755 (HGP31_26755)	pilC	5920894..5922111 (+)	1218	WP_168758958.1	type II secretion system F family protein	Machinery gene
HGP31_RS26760 (HGP31_26760)	pilD	5922113..5922985 (+)	873	WP_168758959.1	prepilin peptidase	Machinery gene
HGP31_RS26765 (HGP31_26765)	coaE	5922982..5923605 (+)	624	WP_033039521.1	dephospho-CoA kinase	-
HGP31_RS26770 (HGP31_26770)	yacG	5923602..5923802 (+)	201	WP_020798606.1	DNA gyrase inhibitor YacG	-
HGP31_RS26775 (HGP31_26775)	-	5924021..5924581 (+)	561	WP_020798607.1	hypothetical protein	-
HGP31_RS26780 (HGP31_26780)	-	5924603..5924920 (-)	318	WP_168759233.1	cytochrome C oxidase subunit IV family protein	-

Sequence

Protein

Download Length: 139 a.a. Molecular weight: 14351.55 Da Isoelectric Point: 7.5889

                                >NTDB_id=438960 HGP31_RS26750 WP_020798602.1 5920162..5920581(-) (pilA) [Pseudomonas umsongensis strain CY-1]

MNNQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGLAEISALKVAFEDLMNQGTDPDLTQVGGSATTSNCATT

AVGKAAEGTGTIGCTILNAPAQVLNKTITLTRSLTGWTCTTGVEQEYAPKGCKGVEPKA

Nucleotide

Download Length: 420 bp

                                >NTDB_id=438960 HGP31_RS26750 WP_020798602.1 5920162..5920581(-) (pilA) [Pseudomonas umsongensis strain CY-1]

TTGAATAATCAAAAAGGCTTTACCCTGATCGAGTTGCTGATAGTCGTGGCGATCATCGGGATCCTGGCGACGTTTGCGAT

CCCTGCTTACTCCAAGTACCAGGCGCGGGCCAAGGTCACGGCAGGTCTTGCCGAGATTTCAGCATTGAAGGTGGCGTTTG

AAGACTTGATGAACCAAGGAACAGATCCGGACCTGACGCAGGTGGGAGGCTCCGCCACCACGTCCAACTGCGCCACGACC

GCAGTGGGCAAAGCAGCAGAAGGTACTGGCACAATTGGTTGCACAATCCTCAATGCTCCGGCGCAGGTGTTGAATAAAAC

CATTACCTTGACCCGCTCGTTGACTGGCTGGACGTGCACCACCGGTGTCGAACAGGAGTACGCGCCGAAAGGCTGCAAGG

GCGTTGAGCCAAAAGCCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Acinetobacter baumannii strain A118	48.592	100	0.496
pilA/pilAI	Pseudomonas stutzeri DSM 10701	44.853	97.842	0.439
comP	Acinetobacter baylyi ADP1	40.268	100	0.432
pilA2	Legionella pneumophila str. Paris	41.259	100	0.424
pilA	Pseudomonas aeruginosa PAK	39.865	100	0.424
pilA	Vibrio cholerae strain A1552	41.135	100	0.417
pilA	Vibrio cholerae C6706	41.135	100	0.417
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	41.135	100	0.417
pilA/pilAII	Pseudomonas stutzeri DSM 10701	42.963	97.122	0.417
pilA2	Legionella pneumophila strain ERS1305867	40.559	100	0.417

Detailed information NTG0438960