Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HGP31_RS26755 Genome accession   NZ_CP051487
Coordinates   5920894..5922111 (+) Length   405 a.a.
NCBI ID   WP_168758958.1    Uniprot ID   A0AAE7DGA3
Organism   Pseudomonas umsongensis strain CY-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5915894..5927111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGP31_RS26740 (HGP31_26740) - 5916380..5919334 (+) 2955 WP_168758956.1 DUF748 domain-containing protein -
  HGP31_RS26745 (HGP31_26745) - 5919497..5919850 (-) 354 WP_168758957.1 BON domain-containing protein -
  HGP31_RS26750 (HGP31_26750) pilA 5920162..5920581 (-) 420 WP_020798602.1 pilin Machinery gene
  HGP31_RS26755 (HGP31_26755) pilC 5920894..5922111 (+) 1218 WP_168758958.1 type II secretion system F family protein Machinery gene
  HGP31_RS26760 (HGP31_26760) pilD 5922113..5922985 (+) 873 WP_168758959.1 prepilin peptidase Machinery gene
  HGP31_RS26765 (HGP31_26765) coaE 5922982..5923605 (+) 624 WP_033039521.1 dephospho-CoA kinase -
  HGP31_RS26770 (HGP31_26770) yacG 5923602..5923802 (+) 201 WP_020798606.1 DNA gyrase inhibitor YacG -
  HGP31_RS26775 (HGP31_26775) - 5924021..5924581 (+) 561 WP_020798607.1 hypothetical protein -
  HGP31_RS26780 (HGP31_26780) - 5924603..5924920 (-) 318 WP_168759233.1 cytochrome C oxidase subunit IV family protein -
  HGP31_RS26785 (HGP31_26785) - 5924934..5925638 (-) 705 WP_033039518.1 heme-copper oxidase subunit III family protein -
  HGP31_RS26790 (HGP31_26790) - 5925645..5926337 (-) 693 WP_168758960.1 cytochrome c oxidase subunit 3 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44450.34 Da        Isoelectric Point: 9.9131

>NTDB_id=438961 HGP31_RS26755 WP_168758958.1 5920894..5922111(+) (pilC) [Pseudomonas umsongensis strain CY-1]
MAVKAARTSVYTWEGTDRKGTKVTGELSAQNPAMIRTKLRKQGINPGKVRRKTTSIFNLGKRIKAQDIALFTRQMATMMK
AGVPLLLSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIRKAMTYPLIVVCVAIIVTGILLVEVVPQFESVFKGFGAQLPSFTLMVIDLSQFMQAWWWMLLGVLVTAAFAVR
HALKTSQGFRDRMDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIRQDVATGM
QLNFSMRTSGIFPNMAIQMTAIGEESGALDDMLDKVAGFYEDEVDNVVDSLTTLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=438961 HGP31_RS26755 WP_168758958.1 5920894..5922111(+) (pilC) [Pseudomonas umsongensis strain CY-1]
ATGGCAGTCAAGGCAGCAAGAACCAGTGTGTACACCTGGGAAGGCACAGACAGGAAAGGTACGAAGGTGACGGGCGAATT
GAGCGCCCAGAACCCGGCAATGATCAGGACGAAATTGCGCAAGCAGGGCATCAACCCCGGCAAGGTGCGCAGGAAAACCA
CGTCGATTTTCAATCTGGGCAAACGTATCAAGGCCCAGGACATCGCCCTCTTCACCCGGCAAATGGCAACCATGATGAAA
GCCGGCGTGCCGTTGTTGCTGTCTTTCGACATCATCGGTGAAGGCTTCGATAACCCGGCCATGCGCAAGCTCGTTGATGA
GGTGAAACAGGAAGTGGCGGCGGGCAATAGCTTCGCCACCGCCCTGCGTAAAAAACCGCAATATTTCGATGAGTTGTACT
GCAACCTGGTAGACGCCGGGGAGCAGGCTGGCGCGCTGGACACGCTGCTGGAACGGGTGGCGACCTACAAGGAGAAAAGC
GAAAGTCTCAAGGCGAAAATCAGGAAAGCCATGACCTACCCGCTGATCGTGGTGTGTGTTGCGATCATCGTGACTGGCAT
CCTGCTGGTCGAGGTGGTGCCGCAATTCGAATCGGTGTTCAAGGGCTTTGGCGCTCAATTGCCGTCCTTTACCTTGATGG
TCATCGACCTGTCGCAATTCATGCAAGCATGGTGGTGGATGCTGCTGGGCGTACTGGTCACGGCTGCTTTCGCTGTACGC
CATGCCCTGAAAACCTCGCAAGGTTTTCGTGACCGAATGGACACCTGGCTGCTGAAACTGCCGCTGGTCGGGACCTTGAT
GTACAAGTCCGCCGTGGCCCGTTTCGCCCGCACGCTGTCGACGACCTTCGCCGCTGGCGTGCCGCTGGTCGAGGCCTTGG
AATCGGTGGCCGGCGCCACCGGCAACATCGTGTTCAAACGCGCGGTGTTGCGCATCCGACAGGACGTTGCGACGGGTATG
CAGCTGAATTTTTCCATGCGCACTTCCGGTATTTTCCCGAATATGGCCATTCAGATGACCGCCATAGGCGAGGAGTCGGG
CGCACTCGACGACATGCTCGACAAGGTGGCAGGTTTCTACGAAGACGAGGTCGACAATGTGGTCGACTCCCTCACCACCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATTGTCGGCGGCCTGGTGGTCGCAATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

70.617

100

0.706
  pilC Acinetobacter baylyi ADP1

58.088

100

0.585
  pilC Acinetobacter baumannii D1279779

57.353

100

0.578
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

43.951

100

0.44
  pilG Neisseria meningitidis 44/76-A

43.457

100

0.435
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

41.414

97.778

0.405
  pilC Thermus thermophilus HB27

40.1

98.519

0.395