NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HGP31_RS26760	Genome accession	NZ_CP051487
Coordinates	5922113..5922985 (+)	Length	290 a.a.
NCBI ID	WP_168758959.1	Uniprot ID	A0AAE7DGQ1
Organism	Pseudomonas umsongensis strain CY-1
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5917113..5927985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGP31_RS26745 (HGP31_26745)	-	5919497..5919850 (-)	354	WP_168758957.1	BON domain-containing protein	-
HGP31_RS26750 (HGP31_26750)	pilA	5920162..5920581 (-)	420	WP_020798602.1	pilin	Machinery gene
HGP31_RS26755 (HGP31_26755)	pilC	5920894..5922111 (+)	1218	WP_168758958.1	type II secretion system F family protein	Machinery gene
HGP31_RS26760 (HGP31_26760)	pilD	5922113..5922985 (+)	873	WP_168758959.1	prepilin peptidase	Machinery gene
HGP31_RS26765 (HGP31_26765)	coaE	5922982..5923605 (+)	624	WP_033039521.1	dephospho-CoA kinase	-
HGP31_RS26770 (HGP31_26770)	yacG	5923602..5923802 (+)	201	WP_020798606.1	DNA gyrase inhibitor YacG	-
HGP31_RS26775 (HGP31_26775)	-	5924021..5924581 (+)	561	WP_020798607.1	hypothetical protein	-
HGP31_RS26780 (HGP31_26780)	-	5924603..5924920 (-)	318	WP_168759233.1	cytochrome C oxidase subunit IV family protein	-
HGP31_RS26785 (HGP31_26785)	-	5924934..5925638 (-)	705	WP_033039518.1	heme-copper oxidase subunit III family protein	-
HGP31_RS26790 (HGP31_26790)	-	5925645..5926337 (-)	693	WP_168758960.1	cytochrome c oxidase subunit 3	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32243.63 Da Isoelectric Point: 8.3591

                                >NTDB_id=438962 HGP31_RS26760 WP_168758959.1 5922113..5922985(+) (pilD) [Pseudomonas umsongensis strain CY-1]

MPLNDMLTHYPLAFVVIAGVVGLLVGSFLNVLVWRLPKMLEREWRVQAHEILGLPGETSLPTFNLMLPHSQCPHCGHRIR

AWENIPVFSFMFLRGRCSACATPISKRYPLTELACALLSAFIAWHFGFGWQAGMAMLLTWGLLAMSLIDVEHQLLPDVLV

LPLMWLGLIVNSLDLFVPLPEALWGAIAGYMALWTVFWVFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTIVLSSLAG

AIIGAIYLRLRKAQTATPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK

Nucleotide

Download Length: 873 bp

                                >NTDB_id=438962 HGP31_RS26760 WP_168758959.1 5922113..5922985(+) (pilD) [Pseudomonas umsongensis strain CY-1]

ATGCCCTTGAACGATATGCTTACCCACTACCCACTGGCTTTCGTCGTCATCGCCGGGGTGGTCGGCCTGCTGGTCGGCAG

CTTCCTCAACGTACTGGTGTGGCGCCTGCCGAAGATGCTTGAGCGCGAGTGGCGCGTGCAGGCCCATGAGATCCTCGGGC

TGCCCGGCGAAACGTCGCTGCCGACTTTCAATTTGATGCTGCCGCATTCCCAGTGCCCACATTGCGGCCACCGGATTCGC

GCCTGGGAAAACATTCCAGTGTTCAGCTTCATGTTCCTGCGCGGGCGCTGTTCCGCCTGCGCAACGCCGATCAGCAAACG

CTATCCATTGACTGAGCTGGCCTGCGCCCTCCTGTCGGCGTTCATTGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCA

TGGCAATGCTCCTGACCTGGGGCTTGCTGGCCATGAGCCTGATCGACGTCGAGCATCAACTATTGCCCGATGTACTGGTG

CTACCGCTGATGTGGCTGGGGCTGATCGTCAACAGCCTCGATCTGTTCGTCCCATTGCCTGAAGCGTTATGGGGTGCAAT

TGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGGCATGGGGATT

TCAAGCTGCTGGCGATGTTTGGCGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGATCGTCTTGTCATCCCTGGCGGGT

GCGATCATCGGCGCGATTTACCTGCGCCTTCGCAAGGCACAAACAGCGACGCCTATCCCTTTTGGCCCCTATCTGGCCAT

TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTCTGAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Vibrio cholerae strain A1552	50	97.241	0.486
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455
pilD	Acinetobacter baumannii D1279779	46.886	94.138	0.441
pilD	Acinetobacter nosocomialis M2	46.154	94.138	0.434

Detailed information NTG0438962