Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   HF313_RS30430 Genome accession   NZ_CP051166
Coordinates   7072538..7072972 (-) Length   144 a.a.
NCBI ID   WP_404932258.1    Uniprot ID   -
Organism   Massilia atriviolacea strain SOD     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7067538..7077972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF313_RS30405 (HF313_30315) - 7068023..7069615 (-) 1593 WP_370660149.1 M48 family metalloprotease -
  HF313_RS30410 (HF313_30320) moaC 7069701..7070201 (+) 501 WP_126076371.1 cyclic pyranopterin monophosphate synthase MoaC -
  HF313_RS30415 (HF313_30325) - 7070227..7070679 (-) 453 WP_126076372.1 pilin -
  HF313_RS30420 (HF313_30330) comP 7070925..7071374 (-) 450 WP_126076373.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HF313_RS30425 (HF313_30335) - 7071588..7072163 (-) 576 WP_126076374.1 FHA domain-containing protein -
  HF313_RS30430 (HF313_30340) comP 7072538..7072972 (-) 435 WP_404932258.1 pilin Machinery gene
  HF313_RS30435 (HF313_30345) sucD 7073278..7074159 (-) 882 WP_099874964.1 succinate--CoA ligase subunit alpha -
  HF313_RS30440 (HF313_30350) sucC 7074175..7075347 (-) 1173 WP_126076376.1 ADP-forming succinate--CoA ligase subunit beta -
  HF313_RS30445 (HF313_30355) - 7075419..7075985 (-) 567 WP_126076395.1 DUF2889 domain-containing protein -
  HF313_RS30450 (HF313_30360) - 7076773..7076976 (-) 204 WP_126076377.1 hypothetical protein -
  HF313_RS30455 (HF313_30365) - 7077494..7077769 (-) 276 WP_126076378.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15062.50 Da        Isoelectric Point: 8.4784

>NTDB_id=436494 HF313_RS30430 WP_404932258.1 7072538..7072972(-) (comP) [Massilia atriviolacea strain SOD]
MKMVKKAQAGFTLIELMIVVAIIGILAAVALPAYQDYTVRGRVAELAILGSSMKSTVSENIANNGGKLAADNCVGVNLLT
KATVNTEKTECAAATGVITVTGTKDKAQEVKLTYTPDVSDEGAVAWKCTSAAAKHKYVPAECRN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=436494 HF313_RS30430 WP_404932258.1 7072538..7072972(-) (comP) [Massilia atriviolacea strain SOD]
ATGAAAATGGTTAAAAAAGCACAAGCTGGTTTCACCCTGATCGAACTGATGATCGTTGTTGCAATTATCGGTATTCTGGC
TGCTGTTGCTCTGCCTGCGTACCAGGATTACACCGTTCGCGGCCGCGTTGCTGAACTGGCTATCCTGGGCTCGTCGATGA
AATCGACCGTCAGCGAAAACATCGCCAACAACGGCGGCAAGCTGGCTGCGGACAACTGCGTGGGCGTGAATCTGCTGACC
AAAGCGACCGTCAATACCGAAAAGACCGAATGCGCCGCTGCTACCGGCGTGATCACCGTCACCGGTACCAAGGATAAGGC
TCAGGAAGTAAAACTGACCTACACCCCAGACGTCTCCGACGAAGGCGCGGTTGCTTGGAAATGCACCTCTGCTGCCGCCA
AGCACAAGTATGTGCCTGCAGAATGCCGTAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)

Pilin (bacterial filament) (Pilin)

(39-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

53.425

100

0.542
  pilA Ralstonia pseudosolanacearum GMI1000

41.975

100

0.472
  pilE Neisseria gonorrhoeae strain FA1090

39.752

100

0.444
  pilA2 Legionella pneumophila str. Paris

46.324

94.444

0.438
  pilA2 Legionella pneumophila strain ERS1305867

46.324

94.444

0.438
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

32.979

100

0.431
  pilE Neisseria gonorrhoeae MS11

38.217

100

0.417
  pilA Pseudomonas aeruginosa PAK

36.538

100

0.396
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.931

100

0.382
  pilA Acinetobacter baumannii strain A118

38.732

98.611

0.382
  pilA/pilA1 Eikenella corrodens VA1

34.641

100

0.368