Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   HF313_RS30420 Genome accession   NZ_CP051166
Coordinates   7070925..7071374 (-) Length   149 a.a.
NCBI ID   WP_126076373.1    Uniprot ID   A0A430HH38
Organism   Massilia atriviolacea strain SOD     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7065925..7076374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF313_RS30395 (HF313_30305) - 7066222..7066848 (+) 627 WP_126076368.1 DUF2946 family protein -
  HF313_RS30400 (HF313_30310) - 7066914..7067915 (+) 1002 WP_126076369.1 Rpn family recombination-promoting nuclease/putative transposase -
  HF313_RS30405 (HF313_30315) - 7068023..7069615 (-) 1593 WP_370660149.1 M48 family metalloprotease -
  HF313_RS30410 (HF313_30320) moaC 7069701..7070201 (+) 501 WP_126076371.1 cyclic pyranopterin monophosphate synthase MoaC -
  HF313_RS30415 (HF313_30325) - 7070227..7070679 (-) 453 WP_126076372.1 pilin -
  HF313_RS30420 (HF313_30330) comP 7070925..7071374 (-) 450 WP_126076373.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HF313_RS30425 (HF313_30335) - 7071588..7072163 (-) 576 WP_126076374.1 FHA domain-containing protein -
  HF313_RS30430 (HF313_30340) comP 7072538..7072972 (-) 435 WP_404932258.1 pilin Machinery gene
  HF313_RS30435 (HF313_30345) sucD 7073278..7074159 (-) 882 WP_099874964.1 succinate--CoA ligase subunit alpha -
  HF313_RS30440 (HF313_30350) sucC 7074175..7075347 (-) 1173 WP_126076376.1 ADP-forming succinate--CoA ligase subunit beta -
  HF313_RS30445 (HF313_30355) - 7075419..7075985 (-) 567 WP_126076395.1 DUF2889 domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15367.90 Da        Isoelectric Point: 8.5043

>NTDB_id=436493 HF313_RS30420 WP_126076373.1 7070925..7071374(-) (comP) [Massilia atriviolacea strain SOD]
MNTQPVSKRLQAGFTLIELMIVVAVIGILAAVALPSYQDYTMRGRVSELAILGSTMKVGVMENIVHNGGVIGAGTDNCVG
VALISSATRNTKSSSCVPSSGIIIVTGTPAAGDVVLTLTPTVNTSGITVWKCTAAASHFKYVPAECRQS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=436493 HF313_RS30420 WP_126076373.1 7070925..7071374(-) (comP) [Massilia atriviolacea strain SOD]
ATGAACACCCAACCGGTATCGAAGCGTCTGCAAGCGGGCTTCACCCTCATCGAATTGATGATCGTCGTGGCGGTGATCGG
CATTCTTGCCGCAGTGGCACTGCCTTCCTACCAGGATTACACGATGCGGGGGCGCGTCAGCGAGCTGGCGATACTGGGCT
CGACGATGAAGGTCGGTGTGATGGAGAACATCGTGCATAACGGCGGCGTGATCGGCGCCGGCACCGACAACTGCGTGGGT
GTTGCCTTGATCTCGAGCGCAACCCGGAATACCAAAAGCAGCAGCTGCGTTCCGTCGAGCGGCATCATTATTGTGACGGG
AACCCCTGCTGCCGGCGACGTGGTCCTGACCCTGACGCCGACCGTCAATACCTCGGGCATCACAGTCTGGAAATGCACAG
CCGCAGCGTCCCACTTCAAGTACGTGCCTGCCGAGTGCCGTCAGAGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-34)

Pilin (bacterial filament) (Pilin)

(43-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430HH38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

53.425

97.987

0.523
  pilA Ralstonia pseudosolanacearum GMI1000

41.52

100

0.477
  pilA2 Legionella pneumophila str. Paris

43.796

91.946

0.403
  pilA2 Legionella pneumophila strain ERS1305867

43.796

91.946

0.403
  pilA Pseudomonas aeruginosa PAK

35.849

100

0.383