Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   HA248_RS10040 Genome accession   NZ_CP050175
Coordinates   1923512..1923838 (-) Length   108 a.a.
NCBI ID   WP_000738638.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701590     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1918512..1928838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA248_RS10000 (HA248_09980) rnpA 1918536..1918907 (-) 372 WP_000739246.1 ribonuclease P protein component -
  HA248_RS11770 - 1918924..1919055 (-) 132 WP_000768904.1 hypothetical protein -
  HA248_RS10005 (HA248_09985) - 1919056..1920246 (-) 1191 WP_000167766.1 acetate kinase -
  HA248_RS10010 (HA248_09990) comYH 1920297..1921250 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  HA248_RS10015 (HA248_09995) - 1921311..1921898 (-) 588 WP_000679774.1 class I SAM-dependent methyltransferase -
  HA248_RS10020 (HA248_10000) comGG/cglG 1922035..1922448 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  HA248_RS10025 (HA248_10005) comGF/cglF 1922426..1922887 (-) 462 WP_000250545.1 competence type IV pilus minor pilin ComGF Machinery gene
  HA248_RS10030 (HA248_10010) comGE/cglE 1922850..1923152 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  HA248_RS10035 (HA248_10015) comGD/cglD 1923115..1923519 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  HA248_RS10040 (HA248_10020) comGC/cglC 1923512..1923838 (-) 327 WP_000738638.1 comG operon protein ComGC Machinery gene
  HA248_RS10045 (HA248_10025) comGB/cglB 1923840..1924856 (-) 1017 WP_013193332.1 competence type IV pilus assembly protein ComGB Machinery gene
  HA248_RS10050 (HA248_10030) comGA/cglA/cilD 1924804..1925745 (-) 942 WP_000249556.1 competence type IV pilus ATPase ComGA Machinery gene
  HA248_RS10055 (HA248_10035) - 1925821..1926186 (-) 366 WP_000286415.1 DUF1033 family protein -
  HA248_RS10060 (HA248_10040) - 1926337..1927395 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  HA248_RS10065 (HA248_10045) nagA 1927558..1928709 (-) 1152 WP_033705218.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12173.35 Da        Isoelectric Point: 10.0523

>NTDB_id=430572 HA248_RS10040 WP_000738638.1 1923512..1923838(-) (comGC/cglC) [Streptococcus pneumoniae strain PZ900701590]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLSKLQA
DGRITEEQAKAYKEYHDKNGVANRKVND

Nucleotide


Download         Length: 327 bp        

>NTDB_id=430572 HA248_RS10040 WP_000738638.1 1923512..1923838(-) (comGC/cglC) [Streptococcus pneumoniae strain PZ900701590]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAAATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAGGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTGGAAAAGAATGAAGATGCTAGCCTAAGCAAGTTACAAGCA
GATGGGCGAATCACGGAAGAACAGGCTAAAGCTTATAAAGAATACCATGATAAAAATGGAGTAGCAAATCGTAAAGTCAA
TGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus pneumoniae Rx1

98.148

100

0.981
  comGC/cglC Streptococcus pneumoniae D39

98.148

100

0.981
  comGC/cglC Streptococcus pneumoniae R6

98.148

100

0.981
  comGC/cglC Streptococcus pneumoniae TIGR4

97.222

100

0.972
  comGC/cglC Streptococcus mitis SK321

94.444

100

0.944
  comGC/cglC Streptococcus mitis NCTC 12261

93.137

94.444

0.88
  comYC Streptococcus gordonii str. Challis substr. CH1

72.917

88.889

0.648
  comYC Streptococcus mutans UA140

63.725

94.444

0.602
  comYC Streptococcus mutans UA159

63.725

94.444

0.602
  comYC Streptococcus suis isolate S10

70.37

75

0.528
  comGC Lactococcus lactis subsp. cremoris KW2

54.902

94.444

0.519
  comGC Staphylococcus aureus MW2

50

79.63

0.398
  comGC Staphylococcus aureus N315

50

79.63

0.398
  comGC Latilactobacillus sakei subsp. sakei 23K

45.349

79.63

0.361